Variant report

Variant	rs964091
Chromosome Location	chr1:61567939-61567940
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:61550500..61552522-chr1:61567792..61569935,2	MCF-7	breast:
2	chr1:61515283..61518278-chr1:61564084..61568458,5	K562	blood:
3	chr1:61563289..61566270-chr1:61566555..61569586,4	K562	blood:
4	chr1:61565382..61568002-chr1:61570318..61572303,2	K562	blood:
5	chr1:61563954..61566270-chr1:61566555..61568086,2	K562	blood:
6	chr1:61567279..61569762-chr1:61586131..61588682,2	K562	blood:
7	chr1:61546229..61553202-chr1:61567332..61574812,14	K562	blood:

Variant related genes	Relation type
ENSG00000162599	Chromatin interaction
ENSG00000263380	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10493302	0.87[CHD][hapmap];0.82[JPT][hapmap]
rs10789092	1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs10889206	0.82[JPT][hapmap]
rs10889207	0.83[EUR][1000 genomes]
rs11207692	0.84[TSI][hapmap]
rs11207695	1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs11207696	0.83[EUR][1000 genomes]
rs12126737	1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs12130085	0.84[TSI][hapmap]
rs12142294	0.91[TSI][hapmap];0.83[EUR][1000 genomes]
rs12403502	1.00[TSI][hapmap]
rs12409737	0.83[EUR][1000 genomes]
rs12410750	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1391432	0.86[JPT][hapmap]
rs1909118	0.81[YRI][hapmap];0.88[AFR][1000 genomes]
rs1930314	0.83[EUR][1000 genomes]
rs2050544	0.82[JPT][hapmap]
rs2807990	0.82[JPT][hapmap]
rs334735	0.81[JPT][hapmap]
rs3767302	0.94[ASN][1000 genomes]
rs4620575	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.85[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4915729	1.00[TSI][hapmap]
rs6670604	0.87[CHD][hapmap];0.82[JPT][hapmap]
rs9436630	0.91[CHD][hapmap];0.82[JPT][hapmap]

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:61554600-61581200	Weak transcription	Esophagus	oesophagus
2	chr1:61556200-61569600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr1:61556600-61573200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr1:61558600-61568400	Weak transcription	Small Intestine	intestine
5	chr1:61558600-61581200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr1:61558600-61586000	Weak transcription	Fetal Intestine Small	intestine
7	chr1:61559000-61582000	Weak transcription	Hela-S3	cervix
8	chr1:61559600-61569800	Weak transcription	K562	blood
9	chr1:61560400-61575800	Weak transcription	Fetal Stomach	stomach
10	chr1:61561400-61576200	Weak transcription	HUVEC	blood vessel
11	chr1:61563600-61568400	Weak transcription	Stomach Mucosa	stomach
12	chr1:61563600-61586000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:61563800-61585600	Weak transcription	NHEK	skin
14	chr1:61563800-61585800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr1:61564200-61569600	Weak transcription	Fetal Heart	heart
16	chr1:61564400-61587400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr1:61565200-61574200	Weak transcription	HepG2	liver
18	chr1:61566000-61576000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr1:61566200-61569000	Weak transcription	Spleen	Spleen
20	chr1:61566800-61568000	Active TSS	Right Atrium	heart
21	chr1:61566800-61568400	Active TSS	Skeletal Muscle Male	skeletal muscle
22	chr1:61567000-61568000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr1:61567000-61568000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr1:61567000-61568000	Active TSS	Brain Anterior Caudate	brain
25	chr1:61567000-61568000	Active TSS	Psoas Muscle	Psoas
26	chr1:61567000-61568000	Active TSS	NHDF-Ad	bronchial
27	chr1:61567000-61568200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr1:61567000-61579000	Weak transcription	Left Ventricle	heart
29	chr1:61567200-61568000	Active TSS	Rectal Mucosa Donor 29	rectum
30	chr1:61567200-61568200	Enhancers	Fetal Lung	lung
31	chr1:61567400-61568000	Active TSS	Brain Angular Gyrus	brain
32	chr1:61567400-61568400	Weak transcription	Fetal Muscle Leg	muscle
33	chr1:61567400-61568600	Active TSS	Fetal Brain Female	brain
34	chr1:61567600-61568000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr1:61567600-61568000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr1:61567600-61568000	Flanking Active TSS	Fetal Brain Male	brain
37	chr1:61567600-61568000	Active TSS	Stomach Smooth Muscle	stomach
38	chr1:61567600-61569000	Enhancers	Cortex derived primary cultured neurospheres	brain
39	chr1:61567600-61569800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
40	chr1:61567600-61581200	Weak transcription	Ovary	ovary
41	chr1:61567600-61582000	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr1:61567800-61568000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr1:61567800-61568000	Flanking Active TSS	Brain Cingulate Gyrus	brain
44	chr1:61567800-61568000	Active TSS	Brain Germinal Matrix	brain
45	chr1:61567800-61568000	Flanking Active TSS	Brain Hippocampus Middle	brain
46	chr1:61567800-61568000	Enhancers	Brain Inferior Temporal Lobe	brain
47	chr1:61567800-61568000	Enhancers	A549	lung
48	chr1:61567800-61568200	Enhancers	Muscle Satellite Cultured Cells	--
49	chr1:61567800-61568400	Weak transcription	Liver	Liver
50	chr1:61567800-61568400	Weak transcription	Duodenum Smooth Muscle	Duodenum

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