Variant report

Variant	rs12126737
Chromosome Location	chr1:61554627-61554628
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:61522302..61525777-chr1:61554119..61555915,3	K562	blood:
2	chr1:61514738..61525752-chr1:61554119..61562013,14	K562	blood:

Variant related genes	Relation type
ENSG00000162599	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10789092	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10889207	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11207692	0.87[CHD][hapmap];0.84[TSI][hapmap]
rs11207694	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11207695	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11207696	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11207702	0.86[CHB][hapmap];0.86[CHD][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap]
rs12021605	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs12033718	0.86[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs12126498	1.00[CEU][hapmap]
rs12130085	0.87[CHD][hapmap];0.83[GIH][hapmap];0.84[TSI][hapmap]
rs12142294	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12403502	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12409737	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12565220	0.83[GIH][hapmap]
rs1412712	0.86[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs17121702	0.86[CHB][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.81[ASN][1000 genomes]
rs17121705	0.86[CHB][hapmap];0.86[CHD][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.81[ASN][1000 genomes]
rs1832184	0.86[CHB][hapmap];0.86[CHD][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.81[ASN][1000 genomes]
rs1930314	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4620575	1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs4915729	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4915730	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4915731	0.86[CHB][hapmap];0.86[CHD][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.81[ASN][1000 genomes]
rs964091	1.00[TSI][hapmap];0.83[EUR][1000 genomes]

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:61549400-61558400	Weak transcription	Spleen	Spleen
2	chr1:61549800-61556000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr1:61549800-61556200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr1:61549800-61559400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr1:61550000-61555400	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr1:61550200-61556600	Weak transcription	Placenta	Placenta
7	chr1:61550200-61558000	Weak transcription	Stomach Mucosa	stomach
8	chr1:61550200-61559400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr1:61550400-61558000	Weak transcription	Small Intestine	intestine
10	chr1:61550400-61560000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr1:61550600-61561000	Weak transcription	Colonic Mucosa	Colon
12	chr1:61550800-61557800	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr1:61550800-61559600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr1:61552000-61555000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr1:61552000-61556200	Weak transcription	NHEK	skin
16	chr1:61552200-61558000	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr1:61553400-61554800	Active TSS	Brain Angular Gyrus	brain
18	chr1:61553400-61554800	Active TSS	Brain Cingulate Gyrus	brain
19	chr1:61553400-61555000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
20	chr1:61553400-61555200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr1:61553600-61556200	Weak transcription	Rectal Smooth Muscle	rectum
22	chr1:61553800-61554800	Strong transcription	Primary hematopoietic stem cells	blood
23	chr1:61553800-61554800	Strong transcription	Fetal Intestine Large	intestine
24	chr1:61553800-61555000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr1:61553800-61555000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr1:61553800-61555000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr1:61553800-61555200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr1:61553800-61555200	Strong transcription	Hela-S3	cervix
29	chr1:61553800-61556400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr1:61553800-61556800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr1:61554000-61554800	Genic enhancers	Duodenum Smooth Muscle	Duodenum
32	chr1:61554000-61554800	Strong transcription	Rectal Mucosa Donor 29	rectum
33	chr1:61554000-61554800	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr1:61554000-61555000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr1:61554000-61555000	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr1:61554000-61555000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr1:61554000-61555200	Genic enhancers	Colon Smooth Muscle	Colon
38	chr1:61554000-61555200	Strong transcription	Duodenum Mucosa	Duodenum
39	chr1:61554000-61555400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
40	chr1:61554000-61555400	Strong transcription	Fetal Kidney	kidney
41	chr1:61554000-61555400	Genic enhancers	A549	lung
42	chr1:61554000-61555800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr1:61554000-61555800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
44	chr1:61554000-61555800	Genic enhancers	Liver	Liver
45	chr1:61554000-61556400	Genic enhancers	Fetal Lung	lung
46	chr1:61554000-61556400	Strong transcription	HUVEC	blood vessel
47	chr1:61554000-61556600	Strong transcription	Fetal Muscle Trunk	muscle
48	chr1:61554000-61557400	Strong transcription	K562	blood
49	chr1:61554200-61554800	Strong transcription	Adipose Nuclei	Adipose
50	chr1:61554200-61554800	Flanking Active TSS	Brain Hippocampus Middle	brain

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