Variant report

Variant	rs10896331
Chromosome Location	chr11:68269014-68269015
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:68256624..68259557-chr11:68268136..68270312,2	K562	blood:
2	chr11:68268654..68271597-chr11:68302777..68305331,2	MCF-7	breast:
3	chr11:68265358..68269310-chr11:68272346..68275043,4	MCF-7	breast:
4	chr11:68259181..68262502-chr11:68267020..68269940,3	MCF-7	breast:
5	chr11:68261601..68264180-chr11:68267990..68269944,2	K562	blood:

Variant related genes	Relation type
ENSG00000110075	Chromatin interaction
ENSG00000222339	Chromatin interaction
ENSG00000212093	Chromatin interaction

Extended variants
information (count: 145 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:139)

rs_ID	r²[population]
rs10047412	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10047482	0.92[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10047483	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10501398	0.91[ASN][1000 genomes]
rs10750827	0.88[ASN][1000 genomes]
rs10791981	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10791982	0.91[ASN][1000 genomes]
rs10896326	0.89[ASN][1000 genomes]
rs10896327	0.89[ASN][1000 genomes]
rs10896328	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10896329	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10896330	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10896334	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10896337	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10896338	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10896339	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10896340	0.92[ASN][1000 genomes]
rs10896341	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10896342	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10896343	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10896346	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10896347	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10896348	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10896350	0.88[ASN][1000 genomes]
rs10896351	0.88[ASN][1000 genomes]
rs11228240	0.86[AMR][1000 genomes]
rs11228251	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11228256	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11228258	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11228262	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11228268	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11228269	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11228275	0.91[ASN][1000 genomes]
rs11228276	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11228277	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11228278	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11228279	0.92[ASN][1000 genomes]
rs11228284	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11228287	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11228288	0.90[ASN][1000 genomes]
rs11228291	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11228292	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11228293	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11822059	0.92[ASN][1000 genomes]
rs1193699	0.89[ASN][1000 genomes]
rs12226585	0.90[ASN][1000 genomes]
rs12271290	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12272917	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12274114	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12277225	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12281742	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12283755	0.95[ASN][1000 genomes]
rs12284933	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12285993	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12294029	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12360903	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12363722	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12364620	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12365160	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12941	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17603185	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2155730	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2156463	0.88[ASN][1000 genomes]
rs2236708	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2282563	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2291467	0.85[AMR][1000 genomes]
rs2472420	0.86[ASN][1000 genomes]
rs2510384	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2510392	0.84[ASN][1000 genomes]
rs2513277	0.90[ASN][1000 genomes]
rs2840367	0.91[ASN][1000 genomes]
rs3018713	0.86[ASN][1000 genomes]
rs3740628	0.90[ASN][1000 genomes]
rs3740629	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3740631	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3758643	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3824850	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4084149	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4316515	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4340059	0.90[ASN][1000 genomes]
rs488381	0.92[ASN][1000 genomes]
rs498782	0.85[ASN][1000 genomes]
rs4988291	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55767696	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55816191	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55883802	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55953412	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59056571	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs596494	0.88[ASN][1000 genomes]
rs60212556	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61391279	0.88[ASN][1000 genomes]
rs624003	0.84[ASN][1000 genomes]
rs643609	0.90[ASN][1000 genomes]
rs6591340	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6591341	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6591344	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6591346	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66752716	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67005337	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67101048	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67605986	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67947146	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7101691	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7102273	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7102898	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7104345	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7104877	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7106010	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7106259	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7106339	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7107622	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7108376	0.90[ASN][1000 genomes]
rs7109294	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7113287	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7115374	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7116899	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7116994	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7119422	0.91[ASN][1000 genomes]
rs7120557	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7120635	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7120876	0.91[ASN][1000 genomes]
rs7123564	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7124078	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7126340	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7126451	0.91[ASN][1000 genomes]
rs7127948	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7129248	0.91[ASN][1000 genomes]
rs73506204	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73516838	0.80[ASN][1000 genomes]
rs73516862	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73518807	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7925275	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7927592	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7936582	0.88[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs7944870	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7950900	0.99[ASN][1000 genomes]
rs871212	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs948315	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs948316	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897858	chr11:68077238-68293545	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv897860	chr11:68102000-68293545	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1036561	chr11:68123135-68315685	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	esv1792339	chr11:68199008-68299226	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	esv1803199	chr11:68199008-68299226	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	esv1842405	chr11:68199008-68299226	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:68238600-68287800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:68240000-68269800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr11:68247000-68270800	Weak transcription	Dnd41	blood
4	chr11:68249000-68270000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr11:68249400-68270800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr11:68256600-68287200	Weak transcription	NHEK	skin
7	chr11:68260000-68274200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:68261600-68278000	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr11:68262200-68269200	Enhancers	Primary B cells from peripheral blood	blood
10	chr11:68262200-68277000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr11:68263400-68272600	Enhancers	Psoas Muscle	Psoas
12	chr11:68263600-68271600	Enhancers	Primary T cells fromperipheralblood	blood
13	chr11:68263800-68271800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr11:68264000-68270800	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr11:68264600-68272200	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr11:68264600-68272400	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr11:68264600-68273400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr11:68264600-68273600	Enhancers	Ovary	ovary
19	chr11:68264800-68269400	Enhancers	Left Ventricle	heart
20	chr11:68265000-68270800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr11:68265000-68272400	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr11:68265000-68272600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr11:68265000-68275200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr11:68265200-68270800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr11:68265200-68302600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr11:68265400-68269400	Enhancers	Brain Anterior Caudate	brain
27	chr11:68265400-68270000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr11:68265600-68280000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr11:68265800-68270600	Enhancers	Stomach Smooth Muscle	stomach
30	chr11:68266000-68271000	Weak transcription	Osteobl	bone
31	chr11:68266200-68271200	Enhancers	Spleen	Spleen
32	chr11:68266200-68271800	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr11:68266200-68277600	Weak transcription	HMEC	breast
34	chr11:68266200-68279000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr11:68266400-68269800	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr11:68266400-68270000	Weak transcription	NHDF-Ad	bronchial
37	chr11:68266400-68270400	Weak transcription	Fetal Lung	lung
38	chr11:68266400-68270800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr11:68266400-68270800	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr11:68266400-68272000	Weak transcription	Fetal Kidney	kidney
41	chr11:68266400-68276000	Weak transcription	HSMM	muscle
42	chr11:68266400-68278400	Enhancers	Rectal Smooth Muscle	rectum
43	chr11:68266600-68269200	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr11:68266600-68271000	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr11:68266600-68272000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr11:68266600-68276000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr11:68266800-68270200	Weak transcription	HepG2	liver
48	chr11:68266800-68270800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr11:68266800-68271400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr11:68266800-68272200	Weak transcription	HSMMtube	muscle

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