Variant report

Variant	rs10896351
Chromosome Location	chr11:68386896-68386897
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFYB	chr11:68386778-68386933	GM12878	blood:	n/a	n/a
2	POLR2A	chr11:68386870-68387268	SK-N-MC	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000260808	TF binding region
ENSG00000266854	TF binding region

Extended variants
information (count: 148 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:138)

rs_ID	r²[population]
rs10047412	0.81[ASN][1000 genomes]
rs10501398	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10750827	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10791981	0.86[ASN][1000 genomes]
rs10791982	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10896326	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10896327	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10896328	0.83[ASN][1000 genomes]
rs10896329	0.83[ASN][1000 genomes]
rs10896330	0.83[ASN][1000 genomes]
rs10896331	0.88[ASN][1000 genomes]
rs10896334	0.88[ASN][1000 genomes]
rs10896337	0.88[ASN][1000 genomes]
rs10896338	0.86[ASN][1000 genomes]
rs10896339	0.93[ASN][1000 genomes]
rs10896340	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10896341	0.87[ASN][1000 genomes]
rs10896342	0.87[ASN][1000 genomes]
rs10896343	0.87[ASN][1000 genomes]
rs10896346	0.89[ASN][1000 genomes]
rs10896347	0.89[ASN][1000 genomes]
rs10896348	0.91[ASN][1000 genomes]
rs10896350	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11228251	0.86[ASN][1000 genomes]
rs11228256	0.83[ASN][1000 genomes]
rs11228258	0.84[ASN][1000 genomes]
rs11228262	0.86[ASN][1000 genomes]
rs11228268	0.86[ASN][1000 genomes]
rs11228269	0.86[ASN][1000 genomes]
rs11228275	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11228276	0.85[ASN][1000 genomes]
rs11228277	0.89[ASN][1000 genomes]
rs11228278	0.88[ASN][1000 genomes]
rs11228279	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11228284	0.87[ASN][1000 genomes]
rs11228287	0.91[ASN][1000 genomes]
rs11228288	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11228291	0.88[ASN][1000 genomes]
rs11228292	0.89[ASN][1000 genomes]
rs11228293	0.90[ASN][1000 genomes]
rs11822059	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1193699	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1201557	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12226585	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12271290	0.89[ASN][1000 genomes]
rs12272917	0.84[ASN][1000 genomes]
rs12274114	0.84[ASN][1000 genomes]
rs12277225	0.89[ASN][1000 genomes]
rs12281742	0.89[ASN][1000 genomes]
rs12283755	0.89[ASN][1000 genomes]
rs12284933	0.89[ASN][1000 genomes]
rs12285993	0.87[ASN][1000 genomes]
rs12294029	0.86[ASN][1000 genomes]
rs12360903	0.83[ASN][1000 genomes]
rs12363722	0.83[ASN][1000 genomes]
rs12364620	0.83[ASN][1000 genomes]
rs12365160	0.83[ASN][1000 genomes]
rs12941	0.89[ASN][1000 genomes]
rs1685688	0.82[EUR][1000 genomes]
rs17603185	0.88[ASN][1000 genomes]
rs2155730	0.86[ASN][1000 genomes]
rs2156463	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2236708	0.88[ASN][1000 genomes]
rs2282563	0.87[ASN][1000 genomes]
rs2472420	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2510384	0.89[ASN][1000 genomes]
rs2510392	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2513277	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2513285	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2840367	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3018713	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3740628	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3740629	0.87[ASN][1000 genomes]
rs3740631	0.87[ASN][1000 genomes]
rs3758643	0.92[ASN][1000 genomes]
rs3824850	0.87[ASN][1000 genomes]
rs4084149	0.86[ASN][1000 genomes]
rs4316515	0.87[ASN][1000 genomes]
rs4340059	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs488381	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs498782	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4988291	0.89[ASN][1000 genomes]
rs510772	0.83[EUR][1000 genomes]
rs55767696	0.91[ASN][1000 genomes]
rs55816191	0.86[ASN][1000 genomes]
rs55883802	0.86[ASN][1000 genomes]
rs55953412	0.87[ASN][1000 genomes]
rs59056571	0.86[ASN][1000 genomes]
rs596494	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60212556	0.87[ASN][1000 genomes]
rs624003	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs643609	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6591340	0.87[ASN][1000 genomes]
rs6591341	0.89[ASN][1000 genomes]
rs6591344	0.89[ASN][1000 genomes]
rs6591346	0.92[ASN][1000 genomes]
rs66752716	0.86[ASN][1000 genomes]
rs67005337	0.87[ASN][1000 genomes]
rs67101048	0.86[ASN][1000 genomes]
rs67605986	0.87[ASN][1000 genomes]
rs67947146	0.87[ASN][1000 genomes]
rs7101691	0.84[ASN][1000 genomes]
rs7102273	0.93[ASN][1000 genomes]
rs7102898	0.87[ASN][1000 genomes]
rs7104345	0.87[ASN][1000 genomes]
rs7104877	0.90[ASN][1000 genomes]
rs7106010	0.91[ASN][1000 genomes]
rs7106259	0.86[ASN][1000 genomes]
rs7106339	0.83[ASN][1000 genomes]
rs7107622	0.91[ASN][1000 genomes]
rs7108376	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7109294	0.87[ASN][1000 genomes]
rs7113287	0.91[ASN][1000 genomes]
rs7115374	0.87[ASN][1000 genomes]
rs7116899	0.93[ASN][1000 genomes]
rs7116994	0.84[ASN][1000 genomes]
rs7119422	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7120557	0.86[ASN][1000 genomes]
rs7120635	0.86[ASN][1000 genomes]
rs7120876	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7123564	0.89[ASN][1000 genomes]
rs7124078	0.89[ASN][1000 genomes]
rs7126340	0.86[ASN][1000 genomes]
rs7126451	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7127948	0.89[ASN][1000 genomes]
rs7129248	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73506204	0.89[ASN][1000 genomes]
rs73516838	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73516862	0.86[ASN][1000 genomes]
rs73518807	0.85[ASN][1000 genomes]
rs7925275	0.86[ASN][1000 genomes]
rs7927592	0.91[ASN][1000 genomes]
rs7936582	0.89[ASN][1000 genomes]
rs7944870	0.85[ASN][1000 genomes]
rs7950900	0.89[ASN][1000 genomes]
rs871212	0.91[ASN][1000 genomes]
rs948315	0.89[ASN][1000 genomes]
rs948316	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431317	chr11:68282676-68411867	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3478641	chr11:68282679-68411856	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv3478652	chr11:68282679-68411856	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	esv3425206	chr11:68282708-68411817	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	esv3511614	chr11:68282726-68411806	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	esv3511615	chr11:68282726-68411806	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	esv3348204	chr11:68282891-68411839	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	nsv832195	chr11:68286383-68474611	Strong transcription Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
9	nsv430403	chr11:68297201-68448324	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
10	nsv897864	chr11:68367007-68453429	Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:68380800-68391200	Weak transcription	K562	blood
2	chr11:68383000-68387200	Weak transcription	HepG2	liver
3	chr11:68383400-68387400	Weak transcription	Ovary	ovary
4	chr11:68384000-68387200	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr11:68384200-68389000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr11:68384200-68389400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr11:68384400-68387200	Weak transcription	HSMMtube	muscle
8	chr11:68384400-68387400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr11:68384400-68387400	Weak transcription	Esophagus	oesophagus
10	chr11:68384400-68387400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr11:68384400-68387600	Weak transcription	Spleen	Spleen
12	chr11:68384600-68387200	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr11:68384600-68387400	Weak transcription	Primary B cells from cord blood	blood
14	chr11:68384800-68387600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:68385400-68387000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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