Variant report

Variant	rs2510392
Chromosome Location	chr11:68394457-68394458
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 148 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:138)

rs_ID	r²[population]
rs10047412	0.81[ASN][1000 genomes]
rs10501398	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10750827	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10791981	0.83[ASN][1000 genomes]
rs10791982	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10896326	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10896327	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10896328	0.83[ASN][1000 genomes]
rs10896329	0.83[ASN][1000 genomes]
rs10896330	0.83[ASN][1000 genomes]
rs10896331	0.84[ASN][1000 genomes]
rs10896334	0.84[ASN][1000 genomes]
rs10896337	0.84[ASN][1000 genomes]
rs10896338	0.83[ASN][1000 genomes]
rs10896339	0.89[ASN][1000 genomes]
rs10896340	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10896341	0.83[ASN][1000 genomes]
rs10896342	0.83[ASN][1000 genomes]
rs10896343	0.84[ASN][1000 genomes]
rs10896346	0.85[ASN][1000 genomes]
rs10896347	0.85[ASN][1000 genomes]
rs10896348	0.87[ASN][1000 genomes]
rs10896350	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10896351	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11228251	0.86[ASN][1000 genomes]
rs11228256	0.83[ASN][1000 genomes]
rs11228258	0.84[ASN][1000 genomes]
rs11228262	0.83[ASN][1000 genomes]
rs11228268	0.83[ASN][1000 genomes]
rs11228269	0.83[ASN][1000 genomes]
rs11228275	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11228276	0.82[ASN][1000 genomes]
rs11228277	0.85[ASN][1000 genomes]
rs11228278	0.84[ASN][1000 genomes]
rs11228279	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11228284	0.83[ASN][1000 genomes]
rs11228287	0.87[ASN][1000 genomes]
rs11228288	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11228291	0.84[ASN][1000 genomes]
rs11228292	0.85[ASN][1000 genomes]
rs11228293	0.86[ASN][1000 genomes]
rs11822059	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1193699	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1201557	0.87[EUR][1000 genomes]
rs12226585	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12271290	0.85[ASN][1000 genomes]
rs12272917	0.84[ASN][1000 genomes]
rs12274114	0.84[ASN][1000 genomes]
rs12277225	0.85[ASN][1000 genomes]
rs12281742	0.85[ASN][1000 genomes]
rs12283755	0.85[ASN][1000 genomes]
rs12284933	0.85[ASN][1000 genomes]
rs12285993	0.83[ASN][1000 genomes]
rs12294029	0.86[ASN][1000 genomes]
rs12360903	0.83[ASN][1000 genomes]
rs12363722	0.83[ASN][1000 genomes]
rs12364620	0.83[ASN][1000 genomes]
rs12365160	0.83[ASN][1000 genomes]
rs12941	0.85[ASN][1000 genomes]
rs1685688	0.81[EUR][1000 genomes]
rs17603185	0.84[ASN][1000 genomes]
rs2155730	0.83[ASN][1000 genomes]
rs2156463	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2236708	0.84[ASN][1000 genomes]
rs2282563	0.83[ASN][1000 genomes]
rs2472420	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2510384	0.89[ASN][1000 genomes]
rs2513277	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2513285	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2840367	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3018713	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3740628	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3740629	0.83[ASN][1000 genomes]
rs3740631	0.83[ASN][1000 genomes]
rs3758643	0.88[ASN][1000 genomes]
rs3824850	0.83[ASN][1000 genomes]
rs4084149	0.83[ASN][1000 genomes]
rs4316515	0.83[ASN][1000 genomes]
rs4340059	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs488381	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs498782	0.90[EUR][1000 genomes]
rs4988291	0.85[ASN][1000 genomes]
rs510772	0.82[EUR][1000 genomes]
rs55767696	0.87[ASN][1000 genomes]
rs55816191	0.86[ASN][1000 genomes]
rs55883802	0.83[ASN][1000 genomes]
rs55953412	0.83[ASN][1000 genomes]
rs59056571	0.83[ASN][1000 genomes]
rs596494	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60212556	0.83[ASN][1000 genomes]
rs624003	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs643609	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6591340	0.83[ASN][1000 genomes]
rs6591341	0.85[ASN][1000 genomes]
rs6591344	0.85[ASN][1000 genomes]
rs6591346	0.88[ASN][1000 genomes]
rs66752716	0.83[ASN][1000 genomes]
rs67005337	0.83[ASN][1000 genomes]
rs67101048	0.83[ASN][1000 genomes]
rs67605986	0.83[ASN][1000 genomes]
rs67947146	0.83[ASN][1000 genomes]
rs7101691	0.84[ASN][1000 genomes]
rs7102273	0.89[ASN][1000 genomes]
rs7102898	0.83[ASN][1000 genomes]
rs7104345	0.83[ASN][1000 genomes]
rs7104877	0.86[ASN][1000 genomes]
rs7106010	0.87[ASN][1000 genomes]
rs7106259	0.83[ASN][1000 genomes]
rs7106339	0.83[ASN][1000 genomes]
rs7107622	0.87[ASN][1000 genomes]
rs7108376	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7109294	0.83[ASN][1000 genomes]
rs7113287	0.87[ASN][1000 genomes]
rs7115374	0.83[ASN][1000 genomes]
rs7116899	0.89[ASN][1000 genomes]
rs7116994	0.84[ASN][1000 genomes]
rs7119422	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7120557	0.83[ASN][1000 genomes]
rs7120635	0.86[ASN][1000 genomes]
rs7120876	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7123564	0.85[ASN][1000 genomes]
rs7124078	0.85[ASN][1000 genomes]
rs7126340	0.86[ASN][1000 genomes]
rs7126451	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7127948	0.85[ASN][1000 genomes]
rs7129248	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73506204	0.85[ASN][1000 genomes]
rs73516838	0.90[EUR][1000 genomes]
rs73516862	0.86[ASN][1000 genomes]
rs73518807	0.82[ASN][1000 genomes]
rs7925275	0.83[ASN][1000 genomes]
rs7927592	0.87[ASN][1000 genomes]
rs7936582	0.85[ASN][1000 genomes]
rs7944870	0.82[ASN][1000 genomes]
rs7950900	0.85[ASN][1000 genomes]
rs871212	0.87[ASN][1000 genomes]
rs948315	0.85[ASN][1000 genomes]
rs948316	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431317	chr11:68282676-68411867	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3478641	chr11:68282679-68411856	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv3478652	chr11:68282679-68411856	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	esv3425206	chr11:68282708-68411817	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	esv3511614	chr11:68282726-68411806	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	esv3511615	chr11:68282726-68411806	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	esv3348204	chr11:68282891-68411839	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	nsv832195	chr11:68286383-68474611	Strong transcription Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
9	nsv430403	chr11:68297201-68448324	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
10	nsv897864	chr11:68367007-68453429	Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:68393600-68395000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr11:68394200-68400000	Weak transcription	HUES6 Cell Line	embryonic stem cell

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