Variant report

Variant	rs624003
Chromosome Location	chr11:68231240-68231241
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:68212103..68215938-chr11:68228494..68232397,5	K562	blood:
2	chr11:68179255..68181332-chr11:68230126..68231810,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000162337	Chromatin interaction

Extended variants
information (count: 167 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:152)

rs_ID	r²[population]
rs10047412	0.91[ASN][1000 genomes]
rs10047482	0.93[ASN][1000 genomes]
rs10047483	0.93[ASN][1000 genomes]
rs10501398	0.95[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10750827	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10791981	0.85[ASN][1000 genomes]
rs10791982	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10896326	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10896327	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10896328	0.86[ASN][1000 genomes]
rs10896329	0.85[ASN][1000 genomes]
rs10896330	0.85[ASN][1000 genomes]
rs10896331	0.84[ASN][1000 genomes]
rs10896334	0.82[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10896337	0.82[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs10896338	0.84[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10896339	0.82[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10896340	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10896341	0.83[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10896342	0.85[ASN][1000 genomes]
rs10896343	0.81[ASN][1000 genomes]
rs10896346	0.83[ASN][1000 genomes]
rs10896347	0.91[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10896348	0.82[CEU][hapmap];0.84[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.81[ASN][1000 genomes]
rs10896350	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10896351	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11228240	0.80[ASN][1000 genomes]
rs11228251	0.82[CEU][hapmap];0.84[CHB][hapmap];0.94[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.85[ASN][1000 genomes]
rs11228256	0.82[CEU][hapmap];0.84[CHB][hapmap];0.91[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11228258	0.82[CEU][hapmap];0.84[CHB][hapmap];0.94[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11228262	0.84[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11228268	0.85[ASN][1000 genomes]
rs11228269	0.82[CEU][hapmap];0.84[CHB][hapmap];0.91[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11228275	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11228276	0.86[ASN][1000 genomes]
rs11228277	0.83[ASN][1000 genomes]
rs11228278	0.82[ASN][1000 genomes]
rs11228279	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11228284	0.84[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11228287	0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11228288	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11228291	0.82[ASN][1000 genomes]
rs11228292	0.84[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11228293	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs11228295	0.85[MEX][hapmap]
rs11822059	0.94[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1193699	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1201557	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12226585	0.95[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12271290	0.82[CEU][hapmap];0.84[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12272917	0.84[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12274114	0.84[ASN][1000 genomes]
rs12277225	0.83[ASN][1000 genomes]
rs12281742	0.82[CEU][hapmap];0.84[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.83[ASN][1000 genomes]
rs12283755	0.84[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.83[ASN][1000 genomes]
rs12284933	0.84[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12285993	0.85[ASN][1000 genomes]
rs12291008	0.84[ASW][hapmap]
rs12294029	0.82[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12360903	0.89[ASN][1000 genomes]
rs12363722	0.89[ASN][1000 genomes]
rs12364620	0.85[ASN][1000 genomes]
rs12365160	0.85[ASN][1000 genomes]
rs12941	0.83[ASN][1000 genomes]
rs1685688	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17603185	0.82[ASN][1000 genomes]
rs2155730	0.82[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs2156463	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2236708	0.84[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2282563	0.84[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2472420	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2510384	0.83[ASN][1000 genomes]
rs2510392	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2513277	0.94[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.95[MKK][hapmap];0.97[TSI][hapmap];0.85[YRI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2513285	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2840367	0.89[ASW][hapmap];0.95[CEU][hapmap];0.92[CHB][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3018713	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3740628	0.89[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3740629	0.84[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs3740631	0.84[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs3758643	0.84[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs3824850	0.85[ASN][1000 genomes]
rs3867143	0.84[CHB][hapmap];0.83[JPT][hapmap]
rs4084149	0.85[ASN][1000 genomes]
rs4316515	0.84[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4340059	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs488381	0.95[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.86[YRI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs498782	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4988291	0.84[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs510772	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs531163	0.84[ASW][hapmap];0.84[MEX][hapmap]
rs55767696	0.81[ASN][1000 genomes]
rs55816191	0.85[ASN][1000 genomes]
rs55883802	0.85[ASN][1000 genomes]
rs55953412	0.85[ASN][1000 genomes]
rs587357	0.80[EUR][1000 genomes]
rs59056571	0.85[ASN][1000 genomes]
rs596494	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs599083	0.84[MEX][hapmap]
rs60212556	0.85[ASN][1000 genomes]
rs607887	0.84[MEX][hapmap]
rs608343	0.84[MEX][hapmap]
rs61391279	0.87[ASN][1000 genomes]
rs630225	0.84[ASW][hapmap];0.84[MEX][hapmap]
rs638076	0.90[MEX][hapmap]
rs643609	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6591340	0.84[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6591341	0.82[CEU][hapmap];0.84[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.83[ASN][1000 genomes]
rs6591344	0.84[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs66752716	0.85[ASN][1000 genomes]
rs67005337	0.85[ASN][1000 genomes]
rs67101048	0.85[ASN][1000 genomes]
rs67605986	0.85[ASN][1000 genomes]
rs67947146	0.85[ASN][1000 genomes]
rs7101691	0.87[ASN][1000 genomes]
rs7102273	0.82[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs7102898	0.84[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7104345	0.83[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7104877	0.82[CEU][hapmap];0.84[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap]
rs7106010	0.81[ASN][1000 genomes]
rs7106259	0.82[CEU][hapmap];0.84[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7106339	0.89[ASN][1000 genomes]
rs7107622	0.82[CEU][hapmap];0.84[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7108376	0.94[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7109294	0.84[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7113287	0.82[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.81[ASN][1000 genomes]
rs7115374	0.85[ASN][1000 genomes]
rs7116994	0.82[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7118897	0.84[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap]
rs7119422	0.95[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7120557	0.85[ASN][1000 genomes]
rs7120635	0.85[ASN][1000 genomes]
rs7120876	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7123564	0.87[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7124078	0.82[CEU][hapmap];0.84[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7126340	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7126451	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7127948	0.83[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7129248	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73506204	0.83[ASN][1000 genomes]
rs73516838	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73516862	0.85[ASN][1000 genomes]
rs73518807	0.81[ASN][1000 genomes]
rs7925275	0.84[CHB][hapmap];0.91[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7927592	0.81[ASN][1000 genomes]
rs7936582	0.84[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.83[ASN][1000 genomes]
rs7944870	0.82[CEU][hapmap];0.84[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7950900	0.84[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs871212	0.81[ASN][1000 genomes]
rs901823	0.90[MEX][hapmap]
rs948315	0.82[CEU][hapmap];0.84[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs948316	0.84[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897857	chr11:68056770-68231240	Enhancers Genic enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv897858	chr11:68077238-68293545	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv897859	chr11:68102000-68231240	Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv897860	chr11:68102000-68293545	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv1047532	chr11:68103330-68239242	Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv541082	chr11:68103330-68239242	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv1036561	chr11:68123135-68315685	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	nsv897862	chr11:68129606-68236389	Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv555285	chr11:68144283-68231240	Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv468618	chr11:68171013-68231240	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	nsv897863	chr11:68186392-68251460	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
12	esv1792339	chr11:68199008-68299226	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
13	esv1803199	chr11:68199008-68299226	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
14	esv1842405	chr11:68199008-68299226	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
15	esv1796394	chr11:68227792-68236389	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs624003	CCS	cis	cerebellum	SCAN
rs624003	RBM4B	cis	cerebellum	SCAN

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:68229000-68231400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
2	chr11:68229000-68231400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
3	chr11:68229000-68231600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:68229200-68231400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
5	chr11:68229400-68233400	Enhancers	Spleen	Spleen
6	chr11:68229600-68231400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:68229600-68231400	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr11:68229600-68231600	Enhancers	Placenta Amnion	Placenta Amnion
9	chr11:68229600-68232600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr11:68230000-68231400	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr11:68230000-68232000	Enhancers	Primary B cells from peripheral blood	blood
12	chr11:68230200-68231400	Genic enhancers	Fetal Intestine Small	intestine
13	chr11:68230200-68231600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr11:68230200-68231600	Enhancers	Fetal Stomach	stomach
15	chr11:68230200-68231600	Weak transcription	Lung	lung
16	chr11:68230200-68231800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr11:68230400-68231400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr11:68230400-68231400	Enhancers	Esophagus	oesophagus
19	chr11:68230400-68231400	Enhancers	Placenta	Placenta
20	chr11:68230400-68231400	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr11:68230400-68231400	Enhancers	NH-A	brain
22	chr11:68230400-68231600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr11:68230400-68231600	Enhancers	Brain Substantia Nigra	brain
24	chr11:68230400-68231600	Enhancers	Fetal Lung	lung
25	chr11:68230400-68231600	Enhancers	Fetal Thymus	thymus
26	chr11:68230400-68231600	Enhancers	Pancreas	Pancrea
27	chr11:68230400-68232000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr11:68230400-68232000	Enhancers	Fetal Brain Male	brain
29	chr11:68230400-68232000	Enhancers	Fetal Muscle Leg	muscle
30	chr11:68230400-68232600	Weak transcription	Stomach Mucosa	stomach
31	chr11:68230400-68234000	Enhancers	Liver	Liver
32	chr11:68230400-68235000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr11:68230400-68236400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr11:68230400-68237600	Weak transcription	Fetal Intestine Large	intestine
35	chr11:68230400-68238200	Enhancers	HepG2	liver
36	chr11:68230400-68238800	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr11:68230600-68231400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr11:68230600-68231400	Enhancers	Brain Angular Gyrus	brain
39	chr11:68230600-68231400	Enhancers	Colon Smooth Muscle	Colon
40	chr11:68230600-68231400	Enhancers	Fetal Heart	heart
41	chr11:68230600-68231400	Enhancers	A549	lung
42	chr11:68230600-68231600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr11:68230600-68231600	Enhancers	Brain Inferior Temporal Lobe	brain
44	chr11:68230600-68231600	Enhancers	NHEK	skin
45	chr11:68230600-68231600	Enhancers	NHLF	lung
46	chr11:68230600-68232000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr11:68230600-68232000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr11:68230600-68232000	Enhancers	Rectal Mucosa Donor 29	rectum
49	chr11:68230600-68232000	Enhancers	Thymus	Thymus
50	chr11:68230600-68232200	Enhancers	Cortex derived primary cultured neurospheres	brain

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