Variant report

Variant	rs10896327
Chromosome Location	chr11:68235275-68235276
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:68233880..68236126-chr11:68339723..68341639,2	K562	blood:

Extended variants
information (count: 153 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:142)

rs_ID	r²[population]
rs10047412	0.89[ASN][1000 genomes]
rs10047482	0.87[ASN][1000 genomes]
rs10047483	0.87[ASN][1000 genomes]
rs10501398	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10750827	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10791981	0.87[ASN][1000 genomes]
rs10791982	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10896326	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10896328	0.88[ASN][1000 genomes]
rs10896329	0.87[ASN][1000 genomes]
rs10896330	0.87[ASN][1000 genomes]
rs10896331	0.89[ASN][1000 genomes]
rs10896334	0.89[ASN][1000 genomes]
rs10896337	0.89[ASN][1000 genomes]
rs10896338	0.85[ASN][1000 genomes]
rs10896339	0.92[ASN][1000 genomes]
rs10896340	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10896341	0.86[ASN][1000 genomes]
rs10896342	0.86[ASN][1000 genomes]
rs10896343	0.86[ASN][1000 genomes]
rs10896346	0.85[ASN][1000 genomes]
rs10896347	0.85[ASN][1000 genomes]
rs10896348	0.86[ASN][1000 genomes]
rs10896350	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10896351	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11228251	0.91[ASN][1000 genomes]
rs11228256	0.87[ASN][1000 genomes]
rs11228258	0.89[ASN][1000 genomes]
rs11228262	0.87[ASN][1000 genomes]
rs11228268	0.87[ASN][1000 genomes]
rs11228269	0.87[ASN][1000 genomes]
rs11228275	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11228276	0.85[ASN][1000 genomes]
rs11228277	0.88[ASN][1000 genomes]
rs11228278	0.87[ASN][1000 genomes]
rs11228279	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11228284	0.86[ASN][1000 genomes]
rs11228287	0.86[ASN][1000 genomes]
rs11228288	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11228291	0.84[ASN][1000 genomes]
rs11228292	0.85[ASN][1000 genomes]
rs11228293	0.82[ASN][1000 genomes]
rs11822059	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1193699	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1201557	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12226585	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12271290	0.88[ASN][1000 genomes]
rs12272917	0.89[ASN][1000 genomes]
rs12274114	0.89[ASN][1000 genomes]
rs12277225	0.88[ASN][1000 genomes]
rs12281742	0.88[ASN][1000 genomes]
rs12283755	0.85[ASN][1000 genomes]
rs12284933	0.88[ASN][1000 genomes]
rs12285993	0.86[ASN][1000 genomes]
rs12294029	0.91[ASN][1000 genomes]
rs12360903	0.91[ASN][1000 genomes]
rs12363722	0.91[ASN][1000 genomes]
rs12364620	0.87[ASN][1000 genomes]
rs12365160	0.87[ASN][1000 genomes]
rs12941	0.85[ASN][1000 genomes]
rs1685688	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17603185	0.84[ASN][1000 genomes]
rs2155730	0.85[ASN][1000 genomes]
rs2156463	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2236708	0.84[ASN][1000 genomes]
rs2282563	0.86[ASN][1000 genomes]
rs2472420	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2510384	0.85[ASN][1000 genomes]
rs2510392	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2513277	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2513285	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2840367	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3018713	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3740628	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3740629	0.86[ASN][1000 genomes]
rs3740631	0.86[ASN][1000 genomes]
rs3758643	0.87[ASN][1000 genomes]
rs3824850	0.86[ASN][1000 genomes]
rs4084149	0.87[ASN][1000 genomes]
rs4316515	0.86[ASN][1000 genomes]
rs4340059	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs488381	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs498782	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4988291	0.85[ASN][1000 genomes]
rs510772	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55767696	0.86[ASN][1000 genomes]
rs55816191	0.91[ASN][1000 genomes]
rs55883802	0.87[ASN][1000 genomes]
rs55953412	0.86[ASN][1000 genomes]
rs587357	0.81[EUR][1000 genomes]
rs59056571	0.87[ASN][1000 genomes]
rs596494	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60212556	0.86[ASN][1000 genomes]
rs61391279	0.85[ASN][1000 genomes]
rs624003	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs643609	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6591340	0.86[ASN][1000 genomes]
rs6591341	0.88[ASN][1000 genomes]
rs6591344	0.85[ASN][1000 genomes]
rs6591346	0.84[ASN][1000 genomes]
rs66752716	0.87[ASN][1000 genomes]
rs67005337	0.86[ASN][1000 genomes]
rs67101048	0.87[ASN][1000 genomes]
rs67605986	0.86[ASN][1000 genomes]
rs67947146	0.86[ASN][1000 genomes]
rs7101691	0.89[ASN][1000 genomes]
rs7102273	0.85[ASN][1000 genomes]
rs7102898	0.86[ASN][1000 genomes]
rs7104345	0.86[ASN][1000 genomes]
rs7104877	0.85[ASN][1000 genomes]
rs7106010	0.86[ASN][1000 genomes]
rs7106259	0.85[ASN][1000 genomes]
rs7106339	0.91[ASN][1000 genomes]
rs7107622	0.86[ASN][1000 genomes]
rs7108376	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7109294	0.86[ASN][1000 genomes]
rs7113287	0.86[ASN][1000 genomes]
rs7115374	0.86[ASN][1000 genomes]
rs7116899	0.85[ASN][1000 genomes]
rs7116994	0.89[ASN][1000 genomes]
rs7119422	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7120557	0.87[ASN][1000 genomes]
rs7120635	0.91[ASN][1000 genomes]
rs7120876	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7123564	0.85[ASN][1000 genomes]
rs7124078	0.88[ASN][1000 genomes]
rs7126340	0.91[ASN][1000 genomes]
rs7126451	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7127948	0.85[ASN][1000 genomes]
rs7129248	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73506204	0.85[ASN][1000 genomes]
rs73516838	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73516862	0.91[ASN][1000 genomes]
rs73518807	0.86[ASN][1000 genomes]
rs7925275	0.87[ASN][1000 genomes]
rs7927592	0.86[ASN][1000 genomes]
rs7936582	0.88[ASN][1000 genomes]
rs7944870	0.85[ASN][1000 genomes]
rs7950900	0.88[ASN][1000 genomes]
rs871212	0.86[ASN][1000 genomes]
rs948315	0.88[ASN][1000 genomes]
rs948316	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897858	chr11:68077238-68293545	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv897860	chr11:68102000-68293545	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1047532	chr11:68103330-68239242	Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv541082	chr11:68103330-68239242	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv1036561	chr11:68123135-68315685	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv897862	chr11:68129606-68236389	Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv897863	chr11:68186392-68251460	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
8	esv1792339	chr11:68199008-68299226	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	esv1803199	chr11:68199008-68299226	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
10	esv1842405	chr11:68199008-68299226	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
11	esv1796394	chr11:68227792-68236389	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:68230400-68236400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr11:68230400-68237600	Weak transcription	Fetal Intestine Large	intestine
3	chr11:68230400-68238200	Enhancers	HepG2	liver
4	chr11:68230400-68238800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr11:68230600-68235600	Weak transcription	HMEC	breast
6	chr11:68230600-68237400	Enhancers	Brain Hippocampus Middle	brain
7	chr11:68230600-68239000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr11:68230600-68239000	Enhancers	Adipose Nuclei	Adipose
9	chr11:68230600-68239000	Weak transcription	Fetal Kidney	kidney
10	chr11:68230600-68239200	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr11:68230600-68241800	Enhancers	Psoas Muscle	Psoas
12	chr11:68230800-68236800	Weak transcription	Fetal Muscle Trunk	muscle
13	chr11:68230800-68237600	Weak transcription	Colonic Mucosa	Colon
14	chr11:68230800-68239000	Genic enhancers	Dnd41	blood
15	chr11:68230800-68239200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr11:68231000-68235400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr11:68231000-68236000	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr11:68231200-68235400	Weak transcription	Small Intestine	intestine
19	chr11:68231200-68235600	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr11:68231200-68239000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr11:68231400-68235600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr11:68231400-68235800	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr11:68231400-68236600	Weak transcription	NH-A	brain
24	chr11:68231400-68236800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr11:68231400-68237600	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr11:68231400-68237600	Weak transcription	Esophagus	oesophagus
27	chr11:68231400-68239400	Enhancers	Primary T helper cells fromperipheralblood	blood
28	chr11:68231400-68240000	Enhancers	Brain Anterior Caudate	brain
29	chr11:68231600-68235800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr11:68231600-68236000	Weak transcription	Placenta	Placenta
31	chr11:68231600-68237600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr11:68231600-68237600	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr11:68231600-68237600	Weak transcription	HUVEC	blood vessel
34	chr11:68232000-68235400	Weak transcription	Thymus	Thymus
35	chr11:68232000-68235800	Weak transcription	Fetal Brain Male	brain
36	chr11:68232200-68239800	Enhancers	Fetal Heart	heart
37	chr11:68232400-68235600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr11:68232400-68237800	Weak transcription	Fetal Brain Female	brain
39	chr11:68232400-68238600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr11:68232600-68239000	Enhancers	Colon Smooth Muscle	Colon
41	chr11:68232800-68236200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr11:68233000-68235600	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr11:68233400-68236000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr11:68233400-68236000	Weak transcription	Aorta	Aorta
45	chr11:68233400-68236000	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr11:68233400-68236400	Weak transcription	Fetal Thymus	thymus
47	chr11:68233600-68235800	Weak transcription	Fetal Lung	lung
48	chr11:68233600-68237600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr11:68233600-68237800	Enhancers	Stomach Smooth Muscle	stomach
50	chr11:68233800-68235400	Weak transcription	Primary B cells from cord blood	blood

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