Variant report

Variant	rs2513285
Chromosome Location	chr11:68395766-68395767
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10501398	0.88[EUR][1000 genomes]
rs10750827	0.83[EUR][1000 genomes]
rs10791982	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10896326	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10896327	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10896340	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10896350	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10896351	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11228275	0.87[EUR][1000 genomes]
rs11228279	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11228288	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11822059	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1193699	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1201557	0.81[EUR][1000 genomes]
rs12226585	0.84[EUR][1000 genomes]
rs2156463	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2472420	0.84[EUR][1000 genomes]
rs2510392	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2513277	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2840367	0.87[EUR][1000 genomes]
rs3018713	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3740628	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4340059	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs488381	0.86[EUR][1000 genomes]
rs498782	0.85[EUR][1000 genomes]
rs596494	0.83[EUR][1000 genomes]
rs624003	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs643609	0.83[EUR][1000 genomes]
rs7108376	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7119422	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7120876	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7126451	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7129248	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73516838	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431317	chr11:68282676-68411867	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3478641	chr11:68282679-68411856	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv3478652	chr11:68282679-68411856	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	esv3425206	chr11:68282708-68411817	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	esv3511614	chr11:68282726-68411806	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	esv3511615	chr11:68282726-68411806	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	esv3348204	chr11:68282891-68411839	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	nsv832195	chr11:68286383-68474611	Strong transcription Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
9	nsv430403	chr11:68297201-68448324	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
10	nsv897864	chr11:68367007-68453429	Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:68394200-68400000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr11:68395000-68396200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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