Variant report

Variant	rs10899942
Chromosome Location	chr10:44390863-44390864
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C10orf136-1	chr10:44390313-44390881	XLOC_008473

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10899935	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10899936	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10899938	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10899939	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10899940	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899943	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11238745	0.82[EUR][1000 genomes]
rs11238747	0.82[EUR][1000 genomes]
rs11238765	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12248836	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1325486	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1325490	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13313099	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1460540	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1947672	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2224985	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7086120	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7097229	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7097453	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73277915	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7901541	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051921	chr10:44378011-44458880	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44360000-44392200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44387800-44394600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:44388800-44391400	Weak transcription	Fetal Muscle Leg	muscle
4	chr10:44388800-44393800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:44388800-44393800	Weak transcription	Right Atrium	heart
6	chr10:44388800-44394000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr10:44388800-44394000	Weak transcription	Left Ventricle	heart
8	chr10:44388800-44394200	Weak transcription	Osteobl	bone
9	chr10:44388800-44397600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr10:44389000-44394200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:44389000-44394800	Weak transcription	Fetal Kidney	kidney
12	chr10:44389600-44393400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr10:44390800-44392600	Enhancers	Fetal Heart	heart
14	chr10:44390800-44394000	Weak transcription	NHDF-Ad	bronchial

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