Variant report

Variant	rs1325486
Chromosome Location	chr10:44388675-44388676
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:44387084..44390446-chr10:44391009..44393507,3	MCF-7	breast:
2	chr10:44387546..44389292-chr10:44394424..44396340,2	MCF-7	breast:
3	chr10:44381279..44384529-chr10:44386530..44388753,3	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10899926	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10899930	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10899931	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10899935	0.83[ASN][1000 genomes]
rs10899936	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10899938	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10899939	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10899940	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10899941	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10899942	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10899943	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899949	0.92[GIH][hapmap]
rs11238765	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12242985	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12248836	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1325490	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13313099	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1460540	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1675291	1.00[CHB][hapmap];0.91[CHD][hapmap]
rs1947672	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2224985	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7086120	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7097229	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7097453	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73277915	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7901541	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051921	chr10:44378011-44458880	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44360000-44392200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44382600-44389000	Enhancers	NHDF-Ad	bronchial
3	chr10:44383200-44388800	Enhancers	Osteobl	bone
4	chr10:44383400-44388800	Enhancers	NHLF	lung
5	chr10:44383400-44389000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr10:44383800-44388800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr10:44385600-44389000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr10:44386400-44388800	Enhancers	HSMM	muscle
9	chr10:44386400-44389400	Enhancers	Fetal Heart	heart
10	chr10:44386600-44389000	Enhancers	HSMMtube	muscle
11	chr10:44386800-44388800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr10:44387000-44388800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr10:44387200-44389600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr10:44387400-44388800	Enhancers	Left Ventricle	heart
15	chr10:44387600-44388800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr10:44387600-44388800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
17	chr10:44387600-44388800	Enhancers	Fetal Muscle Trunk	muscle
18	chr10:44387600-44388800	Enhancers	Fetal Muscle Leg	muscle
19	chr10:44387600-44388800	Enhancers	Right Atrium	heart
20	chr10:44387600-44389000	Enhancers	Fetal Kidney	kidney
21	chr10:44387600-44389000	Enhancers	Fetal Lung	lung
22	chr10:44387800-44388800	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr10:44387800-44388800	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr10:44387800-44394600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr10:44388600-44389600	Weak transcription	Fetal Stomach	stomach

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