Variant report

Variant	rs7097453
Chromosome Location	chr10:44378740-44378741
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44355270..44357315-chr10:44376908..44378969,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10899926	0.90[ASN][1000 genomes]
rs10899930	0.90[ASN][1000 genomes]
rs10899931	0.90[ASN][1000 genomes]
rs10899935	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899936	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899938	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10899939	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10899940	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10899941	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10899942	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10899943	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10899949	1.00[CEU][hapmap];0.92[GIH][hapmap]
rs11238745	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11238747	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11238765	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12242985	0.90[ASN][1000 genomes]
rs12248836	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1325486	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1325490	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13313099	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1460540	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1675291	1.00[CHB][hapmap];0.91[CHD][hapmap];0.81[ASN][1000 genomes]
rs1947672	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2224985	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7086120	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7097229	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73277915	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7901541	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051921	chr10:44378011-44458880	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44360000-44392200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44374400-44383400	Weak transcription	NHLF	lung
3	chr10:44375800-44387400	Weak transcription	Left Ventricle	heart
4	chr10:44377400-44379000	Enhancers	Osteobl	bone
5	chr10:44377600-44378800	Weak transcription	Right Ventricle	heart
6	chr10:44377600-44387600	Weak transcription	Right Atrium	heart
7	chr10:44377800-44383800	Weak transcription	HSMMtube	muscle
8	chr10:44378000-44380000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr10:44378000-44382600	Weak transcription	NHDF-Ad	bronchial
10	chr10:44378000-44383800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr10:44378200-44383200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr10:44378200-44387000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr10:44378400-44378800	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr10:44378400-44378800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr10:44378400-44378800	Enhancers	HUVEC	blood vessel
16	chr10:44378400-44379000	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr10:44378400-44379000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr10:44378400-44379200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr10:44378600-44378800	Enhancers	Gastric	stomach
20	chr10:44378600-44380200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr10:44378600-44383000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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