Variant report

Variant	rs13313099
Chromosome Location	chr10:44380000-44380001
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44379146..44381291-chr10:44381939..44383905,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10899926	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10899930	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10899931	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10899935	0.97[ASN][1000 genomes]
rs10899936	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10899938	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10899939	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10899940	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10899941	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10899942	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10899943	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11238745	0.90[ASN][1000 genomes]
rs11238747	0.90[ASN][1000 genomes]
rs11238765	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12242985	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12248836	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1325486	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1325490	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1460540	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1947672	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2224985	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7086120	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7097229	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7097453	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73277915	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7901541	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051921	chr10:44378011-44458880	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44360000-44392200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44374400-44383400	Weak transcription	NHLF	lung
3	chr10:44375800-44387400	Weak transcription	Left Ventricle	heart
4	chr10:44377600-44387600	Weak transcription	Right Atrium	heart
5	chr10:44377800-44383800	Weak transcription	HSMMtube	muscle
6	chr10:44378000-44380000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr10:44378000-44382600	Weak transcription	NHDF-Ad	bronchial
8	chr10:44378000-44383800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:44378200-44383200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr10:44378200-44387000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr10:44378600-44380200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr10:44378600-44383000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr10:44378800-44380000	Weak transcription	Gastric	stomach
14	chr10:44379000-44383200	Weak transcription	Osteobl	bone
15	chr10:44379800-44381200	Enhancers	Stomach Mucosa	stomach
16	chr10:44380000-44380200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr10:44380000-44380600	Enhancers	Gastric	stomach
18	chr10:44380000-44381200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links