Variant report

Variant	rs11020422
Chromosome Location	chr11:93317122-93317123
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10831074	0.84[ASN][1000 genomes]
rs11020443	0.92[ASN][1000 genomes]
rs11020444	0.92[ASN][1000 genomes]
rs11020447	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs16919080	0.92[ASN][1000 genomes]
rs16919088	0.84[ASN][1000 genomes]
rs17564202	0.84[ASN][1000 genomes]
rs1939563	0.92[ASN][1000 genomes]
rs2155244	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3949089	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4478954	1.00[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs57226582	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61918529	0.84[ASN][1000 genomes]
rs7928672	0.96[ASN][1000 genomes]
rs7932373	0.84[ASN][1000 genomes]
rs7936273	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv1039623	chr11:93141461-93328739	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11020422	CCDC82	cis	parietal	SCAN
rs11020422	MRE11A	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93316600-93317400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr11:93316800-93317400	Enhancers	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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