Variant report

Variant	rs3949089
Chromosome Location	chr11:93323339-93323340
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10831074	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11020422	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11020443	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11020444	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11020447	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16919080	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16919088	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17564202	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1939563	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2155244	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4478954	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57226582	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61918529	0.84[ASN][1000 genomes]
rs7108777	0.83[EUR][1000 genomes]
rs7128771	0.84[EUR][1000 genomes]
rs7928672	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7932373	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7936273	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv1039623	chr11:93141461-93328739	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93319400-93324400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:93319600-93324400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr11:93320400-93324400	Weak transcription	A549	lung
4	chr11:93320600-93323400	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr11:93321600-93324200	Weak transcription	Small Intestine	intestine
6	chr11:93322000-93323400	Enhancers	Rectal Mucosa Donor 29	rectum
7	chr11:93323200-93324200	Weak transcription	Stomach Mucosa	stomach
8	chr11:93323200-93329000	Weak transcription	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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