Variant report

Variant	rs61918529
Chromosome Location	chr11:93347457-93347458
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10831074	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020422	0.84[ASN][1000 genomes]
rs11020443	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11020444	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11020447	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16919080	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16919088	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17564202	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1939563	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2155244	0.84[ASN][1000 genomes]
rs3949089	0.84[ASN][1000 genomes]
rs4478954	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57226582	0.84[ASN][1000 genomes]
rs7108777	0.85[EUR][1000 genomes]
rs7128771	0.87[EUR][1000 genomes]
rs7928672	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7932373	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7936273	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	esv3369556	chr11:93346204-93348252	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
3	esv3436454	chr11:93346554-93347752	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93344400-93347600	Enhancers	Fetal Intestine Small	intestine
2	chr11:93346800-93347600	Weak transcription	Fetal Intestine Large	intestine
3	chr11:93347200-93348200	Enhancers	Duodenum Mucosa	Duodenum
4	chr11:93347400-93347600	Enhancers	Gastric	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links