Variant report

Variant	rs11020447
Chromosome Location	chr11:93345538-93345539
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10831074	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020422	0.84[ASN][1000 genomes]
rs11020443	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11020444	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16919080	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16919088	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17564202	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1939563	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2155244	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3949089	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4478954	1.00[CHB][hapmap];0.85[JPT][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57226582	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61918529	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7108777	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7118456	0.85[EUR][1000 genomes]
rs7128771	0.95[EUR][1000 genomes]
rs7928672	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7932373	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7936273	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93342800-93346800	Enhancers	Fetal Intestine Large	intestine
2	chr11:93343200-93346600	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr11:93343200-93346600	Enhancers	Stomach Mucosa	stomach
4	chr11:93344200-93346800	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr11:93344400-93346200	Enhancers	Liver	Liver
6	chr11:93344400-93346600	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr11:93344400-93347600	Enhancers	Fetal Intestine Small	intestine
8	chr11:93344600-93346400	Weak transcription	Small Intestine	intestine
9	chr11:93344800-93347400	Weak transcription	Gastric	stomach
10	chr11:93345000-93346800	Enhancers	Duodenum Mucosa	Duodenum
11	chr11:93345400-93345600	Enhancers	Colonic Mucosa	Colon
12	chr11:93345400-93345600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
13	chr11:93345400-93345800	Enhancers	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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