Variant report

Variant	rs11020444
Chromosome Location	chr11:93337990-93337991
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10831074	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11020422	0.92[ASN][1000 genomes]
rs11020443	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020447	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16919080	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16919088	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17564202	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1939563	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2155244	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3949089	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4478954	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57226582	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61918529	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7108777	0.92[EUR][1000 genomes]
rs7118456	0.87[EUR][1000 genomes]
rs7128771	0.94[EUR][1000 genomes]
rs7928672	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7932373	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7936273	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93336600-93338000	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr11:93336600-93339600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr11:93337200-93338600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr11:93337200-93339000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:93337400-93338400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:93337400-93338600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr11:93337400-93338800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr11:93337400-93338800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr11:93337400-93338800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr11:93337400-93339600	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr11:93337600-93338600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr11:93337600-93338800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr11:93337800-93338000	Weak transcription	Fetal Brain Male	brain
14	chr11:93337800-93338200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr11:93337800-93339000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr11:93337800-93342800	Weak transcription	Fetal Intestine Large	intestine
17	chr11:93337800-93343000	Weak transcription	Fetal Intestine Small	intestine
18	chr11:93337800-93343200	Weak transcription	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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