Variant report

Variant	rs17564202
Chromosome Location	chr11:93357399-93357400
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:93356197..93359571-chr11:93360394..93364299,4	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10831074	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020422	0.84[ASN][1000 genomes]
rs11020443	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11020444	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11020447	1.00[CHB][hapmap];0.85[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16919080	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16919088	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1939563	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1962041	1.00[CEU][hapmap]
rs1986399	0.85[CEU][hapmap]
rs2155244	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3949089	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs41357749	1.00[CEU][hapmap]
rs4478954	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57226582	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61918529	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7108777	0.89[EUR][1000 genomes]
rs7118456	0.90[EUR][1000 genomes]
rs7128771	0.90[EUR][1000 genomes]
rs7928672	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7932373	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7936273	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17564202	MIR1304	cis	lymphoblastoid	seeQTL

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93348000-93357800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:93355400-93357400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr11:93355400-93357400	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr11:93355400-93359200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:93355600-93358800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:93355800-93357400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:93355800-93358400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr11:93355800-93358400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr11:93355800-93358400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr11:93356000-93358000	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr11:93356000-93359000	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr11:93356000-93359200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr11:93356200-93358800	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr11:93356200-93358800	Enhancers	HepG2	liver
15	chr11:93356400-93357400	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr11:93356400-93358400	Enhancers	Fetal Lung	lung
17	chr11:93356400-93358600	Enhancers	Fetal Intestine Large	intestine
18	chr11:93356400-93358800	Enhancers	Fetal Intestine Small	intestine
19	chr11:93356600-93359600	Enhancers	Fetal Brain Male	brain
20	chr11:93356600-93364600	Weak transcription	Pancreas	Pancrea
21	chr11:93356800-93358000	Enhancers	H1 Cell Line	embryonic stem cell
22	chr11:93357000-93357400	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr11:93357000-93358200	Enhancers	Gastric	stomach
24	chr11:93357000-93358800	Enhancers	Fetal Brain Female	brain
25	chr11:93357200-93357400	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr11:93357200-93357400	Enhancers	Right Atrium	heart
27	chr11:93357200-93358200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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