Variant report

Variant	rs11061729
Chromosome Location	chr12:1488956-1488957
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:1483885..1486721-chr12:1488016..1490382,2	K562	blood:

Extended variants
information (count: 162 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:136)

rs_ID	r²[population]
rs1005394	0.88[CHB][hapmap]
rs10773938	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10773941	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10848460	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10848461	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10848462	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10848463	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10848464	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10848465	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10848466	0.96[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10848467	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10848468	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10848469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10848470	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11061704	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11061707	0.88[CHB][hapmap]
rs11061711	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11061712	0.88[CHB][hapmap]
rs11061714	0.88[CHB][hapmap];0.82[AMR][1000 genomes]
rs11061718	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11061719	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11061720	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11061721	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11061722	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11061723	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11061724	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11061727	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11061728	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11061730	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11061731	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11061732	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11061733	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11061734	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11061735	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11061736	0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11061737	0.81[CEU][hapmap];0.88[CHB][hapmap]
rs11061740	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11061741	0.89[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11061748	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11061750	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11609271	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11609292	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11611107	0.81[CEU][hapmap]
rs11613252	0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11614113	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11830570	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11831980	0.88[CEU][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11836372	0.94[CHB][hapmap]
rs11836774	0.91[ASN][1000 genomes]
rs11837688	0.88[CHB][hapmap]
rs12296944	0.89[CEU][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12298813	0.88[CHB][hapmap]
rs12301937	0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12303877	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12304139	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12305871	1.00[CHB][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12307046	0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12307141	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12308558	0.90[ASN][1000 genomes]
rs12309281	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12311864	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12312647	0.87[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12314672	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap]
rs12314755	0.87[CEU][hapmap];0.92[CHB][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12314845	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12315490	0.92[CHB][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12316105	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12316687	0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12317217	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12317763	0.84[CEU][hapmap];0.94[CHB][hapmap];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12320120	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12320293	0.96[CEU][hapmap];0.94[CHB][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12321617	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12321803	0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12422537	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12422548	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12422634	0.81[ASN][1000 genomes]
rs12423105	0.88[CHB][hapmap]
rs12424140	0.90[CEU][hapmap];0.86[CHB][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12425175	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12810240	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1362265	0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1362266	0.94[CHB][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1476908	0.94[CHB][hapmap];0.81[ASN][1000 genomes]
rs1548805	0.89[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1548806	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16928381	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16928383	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16928393	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2051842	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2051843	0.82[AMR][1000 genomes]
rs2051844	0.85[CEU][hapmap];1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs2052183	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2052184	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2052185	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2158447	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28535515	0.84[ASN][1000 genomes]
rs34554835	0.81[ASN][1000 genomes]
rs34904059	0.81[ASN][1000 genomes]
rs34929071	0.82[AMR][1000 genomes]
rs35098918	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs36018681	0.81[ASN][1000 genomes]
rs41369952	0.88[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4359265	0.81[ASN][1000 genomes]
rs4421802	0.84[ASN][1000 genomes]
rs4444139	0.88[ASN][1000 genomes]
rs4447228	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4562882	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4600274	0.95[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4631941	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56057921	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56126511	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56168743	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56228728	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57707051	0.82[AMR][1000 genomes]
rs58254940	0.82[ASN][1000 genomes]
rs61913071	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61913101	0.91[ASN][1000 genomes]
rs61913111	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61913131	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61913133	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6489282	0.88[CHB][hapmap]
rs73026439	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7304258	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7311231	0.80[AMR][1000 genomes]
rs7313311	0.88[CHB][hapmap]
rs7486336	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs766956	0.88[CHB][hapmap]
rs7955591	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7962697	0.81[ASN][1000 genomes]
rs7968583	0.84[CEU][hapmap];0.88[CHB][hapmap]
rs7972290	0.88[CHB][hapmap]
rs7973734	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7978540	0.81[CEU][hapmap];0.88[CHB][hapmap]
rs7978898	0.81[CEU][hapmap];0.88[CHB][hapmap]
rs956408	0.89[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898576	chr12:813411-1553450	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv948760	chr12:863833-1542875	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv1045278	chr12:920251-1697030	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv529398	chr12:941915-1741311	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv898579	chr12:1013176-1510505	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	nsv898580	chr12:1024688-1569097	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
7	esv2762958	chr12:1049279-1554962	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
8	nsv1052559	chr12:1077964-1588543	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
9	nsv898581	chr12:1084783-1527359	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
10	nsv1046134	chr12:1153489-1675223	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
11	nsv541344	chr12:1153489-1675223	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
12	nsv1042863	chr12:1163817-1902302	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
13	nsv541345	chr12:1163817-1902302	Strong transcription Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
14	nsv1050361	chr12:1274052-1541558	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
15	nsv556944	chr12:1308553-1569097	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
16	nsv898583	chr12:1314430-1507616	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
17	nsv470257	chr12:1314430-1514021	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
18	nsv1054178	chr12:1372157-1682699	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
19	nsv541347	chr12:1372157-1682699	Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
20	nsv1035935	chr12:1400974-1608625	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
21	nsv1039946	chr12:1429190-1548852	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
22	nsv1044918	chr12:1432740-1584649	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
23	nsv541348	chr12:1432740-1584649	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
24	nsv556949	chr12:1437726-1514021	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
25	nsv1046515	chr12:1440896-1588543	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
26	nsv1039488	chr12:1486636-1567275	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:1428200-1500400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr12:1439000-1497800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr12:1450000-1500000	Weak transcription	Spleen	Spleen
4	chr12:1457600-1489000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr12:1465400-1489000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr12:1473200-1500400	Weak transcription	Right Ventricle	heart
7	chr12:1475600-1496800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr12:1477000-1489400	Weak transcription	Brain Anterior Caudate	brain
9	chr12:1477000-1489400	Weak transcription	Fetal Brain Male	brain
10	chr12:1477000-1489400	Weak transcription	Lung	lung
11	chr12:1477000-1500000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr12:1477200-1489000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr12:1477200-1500000	Weak transcription	Fetal Kidney	kidney
14	chr12:1477400-1499800	Weak transcription	HSMM	muscle
15	chr12:1477800-1496800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr12:1477800-1499800	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr12:1478400-1520400	Weak transcription	Pancreas	Pancrea
18	chr12:1478800-1500600	Weak transcription	HSMMtube	muscle
19	chr12:1478800-1500800	Weak transcription	Small Intestine	intestine
20	chr12:1479000-1489000	Weak transcription	HUVEC	blood vessel
21	chr12:1479000-1499800	Weak transcription	A549	lung
22	chr12:1479000-1500000	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr12:1479000-1502400	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr12:1479400-1489200	Weak transcription	Fetal Muscle Trunk	muscle
25	chr12:1479400-1489600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr12:1479400-1500000	Weak transcription	Ovary	ovary
27	chr12:1479600-1489200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr12:1479600-1489800	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr12:1479600-1492200	Weak transcription	Fetal Thymus	thymus
30	chr12:1479600-1500000	Weak transcription	Gastric	stomach
31	chr12:1479800-1497600	Weak transcription	Brain Hippocampus Middle	brain
32	chr12:1480200-1500000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr12:1481400-1490800	Weak transcription	Fetal Heart	heart
34	chr12:1481400-1500000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr12:1481400-1520000	Weak transcription	Thymus	Thymus
36	chr12:1482000-1499800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr12:1482600-1498000	Weak transcription	Brain Angular Gyrus	brain
38	chr12:1483400-1499600	Weak transcription	HMEC	breast
39	chr12:1483800-1490800	Weak transcription	NHLF	lung
40	chr12:1484000-1491000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr12:1484000-1499800	Weak transcription	Stomach Smooth Muscle	stomach
42	chr12:1484200-1491000	Weak transcription	Hela-S3	cervix
43	chr12:1484200-1500200	Weak transcription	Colon Smooth Muscle	Colon
44	chr12:1484400-1491200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr12:1484400-1500200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr12:1484600-1489000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr12:1484600-1492200	Weak transcription	NHDF-Ad	bronchial
48	chr12:1484800-1489600	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr12:1484800-1490200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr12:1484800-1498600	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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