Variant report

Variant	rs11101010
Chromosome Location	chr10:50401214-50401215
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10159700	0.87[AMR][1000 genomes]
rs10159817	0.87[AMR][1000 genomes]
rs10159822	0.87[AMR][1000 genomes]
rs11101007	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11101018	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11101019	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11101046	0.87[AMR][1000 genomes]
rs11101047	0.87[AMR][1000 genomes]
rs11101048	0.87[AMR][1000 genomes]
rs11101050	0.87[AMR][1000 genomes]
rs11101052	0.87[AMR][1000 genomes]
rs11101053	0.87[AMR][1000 genomes]
rs11101055	0.87[AMR][1000 genomes]
rs11101056	0.87[AMR][1000 genomes]
rs11101059	0.87[AMR][1000 genomes]
rs12243236	0.87[AMR][1000 genomes]
rs12244349	0.87[AMR][1000 genomes]
rs12249572	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12251532	0.87[AMR][1000 genomes]
rs12251535	0.87[AMR][1000 genomes]
rs12251541	0.87[AMR][1000 genomes]
rs12253136	0.87[AMR][1000 genomes]
rs12253212	0.87[AMR][1000 genomes]
rs12253681	0.87[AMR][1000 genomes]
rs12253756	0.87[AMR][1000 genomes]
rs12258000	0.87[AMR][1000 genomes]
rs12258809	0.87[AMR][1000 genomes]
rs12260357	0.87[AMR][1000 genomes]
rs12262517	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17009534	1.00[AMR][1000 genomes]
rs61739968	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7358236	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50397000-50401600	Weak transcription	HUVEC	blood vessel
2	chr10:50398600-50402600	Weak transcription	Right Atrium	heart
3	chr10:50398600-50403400	Weak transcription	Spleen	Spleen
4	chr10:50399200-50402400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr10:50399200-50402400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:50399200-50404600	Weak transcription	K562	blood
7	chr10:50399400-50401800	Weak transcription	Primary B cells from peripheral blood	blood
8	chr10:50399400-50402400	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr10:50399600-50401800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr10:50399600-50402600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr10:50399800-50402200	Weak transcription	Primary B cells from cord blood	blood
12	chr10:50400000-50401400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr10:50400000-50401800	Weak transcription	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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