Variant report

Variant	rs12258809
Chromosome Location	chr10:50445127-50445128
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:50433140..50435139-chr10:50443341..50445779,2	K562	blood:
2	chr10:50443853..50446189-chr10:50448741..50451708,2	K562	blood:
3	chr10:50445084..50446757-chr10:50448279..50449919,2	K562	blood:
4	chr10:50442326..50444240-chr10:50444884..50447083,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10159700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10159817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10159822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11101007	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11101010	1.00[YRI][hapmap];0.87[AMR][1000 genomes]
rs11101018	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11101019	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11101046	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11101047	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11101048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11101050	1.00[AMR][1000 genomes]
rs11101052	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11101053	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11101055	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11101056	1.00[AMR][1000 genomes]
rs11101059	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11101115	1.00[YRI][hapmap]
rs12220898	1.00[YRI][hapmap]
rs12243236	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12244349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12249572	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12251532	1.00[AMR][1000 genomes]
rs12251535	1.00[AMR][1000 genomes]
rs12251541	1.00[AMR][1000 genomes]
rs12253136	1.00[AMR][1000 genomes]
rs12253212	1.00[AMR][1000 genomes]
rs12253681	1.00[AMR][1000 genomes]
rs12253756	1.00[AMR][1000 genomes]
rs12258000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12260357	1.00[AMR][1000 genomes]
rs12262517	0.87[AMR][1000 genomes]
rs17009534	0.87[AMR][1000 genomes]
rs61739968	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7074999	1.00[YRI][hapmap]
rs7358036	1.00[AFR][1000 genomes]
rs7358236	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50445000-50445200	Enhancers	K562	blood

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