Variant report

Variant	rs7358236
Chromosome Location	chr10:50423544-50423545
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10159700	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10159817	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10159822	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11101007	1.00[AMR][1000 genomes]
rs11101010	0.87[YRI][hapmap];0.87[AMR][1000 genomes]
rs11101018	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11101019	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11101046	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11101047	1.00[AMR][1000 genomes]
rs11101048	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11101050	1.00[AMR][1000 genomes]
rs11101052	1.00[AMR][1000 genomes]
rs11101053	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11101055	1.00[AMR][1000 genomes]
rs11101056	1.00[AMR][1000 genomes]
rs11101059	1.00[AMR][1000 genomes]
rs12243236	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12244349	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12249572	1.00[AMR][1000 genomes]
rs12251532	1.00[AMR][1000 genomes]
rs12251535	1.00[AMR][1000 genomes]
rs12251541	1.00[AMR][1000 genomes]
rs12253136	1.00[AMR][1000 genomes]
rs12253212	1.00[AMR][1000 genomes]
rs12253681	1.00[AMR][1000 genomes]
rs12253756	1.00[AMR][1000 genomes]
rs12258000	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12258809	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12260357	1.00[AMR][1000 genomes]
rs12262517	0.87[AMR][1000 genomes]
rs17009534	0.87[AMR][1000 genomes]
rs61739968	1.00[AMR][1000 genomes]
rs7358036	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50421600-50425000	Weak transcription	K562	blood
2	chr10:50421600-50431400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:50422000-50429000	Weak transcription	Left Ventricle	heart
4	chr10:50423400-50425000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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