Variant report

Variant	rs11101007
Chromosome Location	chr10:50395229-50395230
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50393958..50396203-chr10:50431601..50433685,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10159700	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10159817	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10159822	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11101010	1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11101018	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11101019	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11101046	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11101047	1.00[AMR][1000 genomes]
rs11101048	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11101050	1.00[AMR][1000 genomes]
rs11101052	1.00[AMR][1000 genomes]
rs11101053	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11101055	1.00[AMR][1000 genomes]
rs11101056	1.00[AMR][1000 genomes]
rs11101059	1.00[AMR][1000 genomes]
rs12243236	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12244349	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12249572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12251532	1.00[AMR][1000 genomes]
rs12251535	1.00[AMR][1000 genomes]
rs12251541	1.00[AMR][1000 genomes]
rs12253136	1.00[AMR][1000 genomes]
rs12253212	1.00[AMR][1000 genomes]
rs12253681	1.00[AMR][1000 genomes]
rs12253756	1.00[AMR][1000 genomes]
rs12258000	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12258809	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12260357	1.00[AMR][1000 genomes]
rs12262517	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17009534	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61739968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7358036	0.80[AFR][1000 genomes]
rs7358236	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50384400-50396000	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr10:50386200-50396000	Weak transcription	Placenta	Placenta
3	chr10:50391400-50395400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr10:50391600-50395400	Enhancers	Primary B cells from cord blood	blood
5	chr10:50391600-50399400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr10:50392000-50396000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:50392200-50396000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:50392600-50396000	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr10:50392800-50396000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr10:50393200-50396200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr10:50393600-50396000	Weak transcription	Fetal Muscle Leg	muscle
12	chr10:50393600-50396200	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
13	chr10:50393600-50396200	Weak transcription	Fetal Thymus	thymus
14	chr10:50394200-50396800	Flanking Active TSS	K562	blood
15	chr10:50394400-50397000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
16	chr10:50394600-50396800	Active TSS	Primary T helper cells PMA-I stimulated	--
17	chr10:50394600-50398600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr10:50394800-50395400	Enhancers	Right Atrium	heart
19	chr10:50394800-50395400	Active TSS	Sigmoid Colon	Sigmoid Colon
20	chr10:50394800-50396000	Active TSS	Duodenum Smooth Muscle	Duodenum
21	chr10:50394800-50396000	Active TSS	GM12878-XiMat	blood
22	chr10:50394800-50396200	Active TSS	Primary T cells fromperipheralblood	blood
23	chr10:50394800-50396200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr10:50394800-50396200	Flanking Active TSS	Brain Substantia Nigra	brain
25	chr10:50394800-50396200	Active TSS	Rectal Mucosa Donor 31	rectum
26	chr10:50394800-50396600	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
27	chr10:50394800-50396600	Active TSS	Duodenum Mucosa	Duodenum
28	chr10:50394800-50396800	Flanking Active TSS	Adipose Nuclei	Adipose
29	chr10:50394800-50396800	Active TSS	Colonic Mucosa	Colon
30	chr10:50394800-50396800	Active TSS	Colon Smooth Muscle	Colon
31	chr10:50394800-50399000	Enhancers	Primary hematopoietic stem cells	blood
32	chr10:50395000-50395400	Flanking Active TSS	Brain Cingulate Gyrus	brain
33	chr10:50395000-50397400	Active TSS	Rectal Smooth Muscle	rectum
34	chr10:50395200-50395400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr10:50395200-50395400	Flanking Active TSS	Brain Angular Gyrus	brain
36	chr10:50395200-50395400	Flanking Active TSS	Brain Anterior Caudate	brain
37	chr10:50395200-50395400	Flanking Active TSS	Brain Hippocampus Middle	brain
38	chr10:50395200-50395400	Enhancers	Esophagus	oesophagus
39	chr10:50395200-50395400	Flanking Active TSS	Pancreas	Pancrea
40	chr10:50395200-50395400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
41	chr10:50395200-50395400	Flanking Active TSS	Stomach Smooth Muscle	stomach
42	chr10:50395200-50395600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
43	chr10:50395200-50395600	Flanking Active TSS	Left Ventricle	heart
44	chr10:50395200-50395600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
45	chr10:50395200-50395600	Flanking Active TSS	Dnd41	blood
46	chr10:50395200-50395600	Bivalent Enhancer	NHLF	lung
47	chr10:50395200-50395800	Flanking Active TSS	Right Ventricle	heart
48	chr10:50395200-50396000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
49	chr10:50395200-50396000	Enhancers	Fetal Muscle Trunk	muscle
50	chr10:50395200-50396200	Active TSS	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links