Variant report

Variant	rs11101052
Chromosome Location	chr10:50449223-50449224
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:50448759..50451494-chr10:50463430..50466103,2	K562	blood:
2	chr10:50446994..50449831-chr10:50450885..50453374,2	K562	blood:
3	chr10:50446413..50449430-chr10:50451528..50453716,3	K562	blood:
4	chr10:50443853..50446189-chr10:50448741..50451708,2	K562	blood:
5	chr10:50445084..50446757-chr10:50448279..50449919,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10159700	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10159817	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10159822	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11101007	1.00[AMR][1000 genomes]
rs11101010	0.87[AMR][1000 genomes]
rs11101018	1.00[AMR][1000 genomes]
rs11101019	1.00[AMR][1000 genomes]
rs11101046	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11101047	1.00[AMR][1000 genomes]
rs11101048	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11101050	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11101053	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11101055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11101056	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11101059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12243236	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12244349	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12249572	1.00[AMR][1000 genomes]
rs12251532	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12251535	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12251541	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12253136	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12253212	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12253681	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12253756	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12258000	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12258809	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12260357	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12262517	0.87[AMR][1000 genomes]
rs17009534	0.87[AMR][1000 genomes]
rs61739968	1.00[AMR][1000 genomes]
rs7358036	0.83[AFR][1000 genomes]
rs7358236	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50445200-50449800	Weak transcription	K562	blood
2	chr10:50445600-50450200	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr10:50447600-50452400	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr10:50447600-50453000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr10:50447800-50450000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:50448400-50449600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:50448400-50449800	Enhancers	Primary hematopoietic stem cells	blood
8	chr10:50448600-50449400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr10:50448800-50449400	Enhancers	HSMMtube	muscle
10	chr10:50448800-50450400	Enhancers	Fetal Stomach	stomach
11	chr10:50449000-50451000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr10:50449000-50451000	Enhancers	Fetal Muscle Trunk	muscle
13	chr10:50449000-50451200	Enhancers	Fetal Muscle Leg	muscle
14	chr10:50449000-50451400	Enhancers	Left Ventricle	heart
15	chr10:50449000-50451400	Enhancers	Right Atrium	heart
16	chr10:50449000-50451600	Enhancers	Fetal Heart	heart
17	chr10:50449000-50451600	Enhancers	Right Ventricle	heart
18	chr10:50449200-50449600	Enhancers	Primary B cells from cord blood	blood
19	chr10:50449200-50450000	Enhancers	Placenta	Placenta

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