Variant report
| Variant | rs12262517 |
|---|---|
| Chromosome Location | chr10:50405573-50405574 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:50404502..50406713-chr10:50505613..50507212,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000236208 | Chromatin interaction |
| ENSG00000177354 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10159700 | 0.87[AMR][1000 genomes] |
| rs10159817 | 0.87[AMR][1000 genomes] |
| rs10159822 | 0.87[AMR][1000 genomes] |
| rs11101007 | 0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11101010 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11101018 | 0.87[AMR][1000 genomes] |
| rs11101019 | 0.87[AMR][1000 genomes] |
| rs11101046 | 0.87[AMR][1000 genomes] |
| rs11101047 | 0.87[AMR][1000 genomes] |
| rs11101048 | 0.87[AMR][1000 genomes] |
| rs11101050 | 0.87[AMR][1000 genomes] |
| rs11101052 | 0.87[AMR][1000 genomes] |
| rs11101053 | 0.87[AMR][1000 genomes] |
| rs11101055 | 0.87[AMR][1000 genomes] |
| rs11101056 | 0.87[AMR][1000 genomes] |
| rs11101059 | 0.87[AMR][1000 genomes] |
| rs12243236 | 0.87[AMR][1000 genomes] |
| rs12244349 | 0.87[AMR][1000 genomes] |
| rs12249572 | 0.87[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs12251532 | 0.87[AMR][1000 genomes] |
| rs12251535 | 0.87[AMR][1000 genomes] |
| rs12251541 | 0.87[AMR][1000 genomes] |
| rs12253136 | 0.87[AMR][1000 genomes] |
| rs12253212 | 0.87[AMR][1000 genomes] |
| rs12253681 | 0.87[AMR][1000 genomes] |
| rs12253756 | 0.87[AMR][1000 genomes] |
| rs12258000 | 0.87[AMR][1000 genomes] |
| rs12258809 | 0.87[AMR][1000 genomes] |
| rs12260357 | 0.87[AMR][1000 genomes] |
| rs17009534 | 1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61739968 | 0.87[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs7358236 | 0.87[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv895375 | chr10:50306386-51028871 | Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 33 gene(s) | inside rSNPs | diseases |
| 2 | nsv534410 | chr10:50317458-50826916 | Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 30 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:50403600-50408600 | Weak transcription | HUVEC | blood vessel |
| 2 | chr10:50404600-50405800 | Enhancers | K562 | blood |
