Variant report

Variant	rs10159817
Chromosome Location	chr10:50447870-50447871
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50446994..50449831-chr10:50450885..50453374,2	K562	blood:
2	chr10:50446413..50449430-chr10:50451528..50453716,3	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10159700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10159822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11101007	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11101010	0.87[AMR][1000 genomes]
rs11101018	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11101019	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11101046	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11101047	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11101048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11101050	1.00[AMR][1000 genomes]
rs11101052	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11101053	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11101055	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11101056	1.00[AMR][1000 genomes]
rs11101059	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12243236	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12244349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12249572	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12251532	1.00[AMR][1000 genomes]
rs12251535	1.00[AMR][1000 genomes]
rs12251541	1.00[AMR][1000 genomes]
rs12253136	1.00[AMR][1000 genomes]
rs12253212	1.00[AMR][1000 genomes]
rs12253681	1.00[AMR][1000 genomes]
rs12253756	1.00[AMR][1000 genomes]
rs12258000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12258809	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12260357	1.00[AMR][1000 genomes]
rs12262517	0.87[AMR][1000 genomes]
rs17009534	0.87[AMR][1000 genomes]
rs61739968	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7358036	1.00[AFR][1000 genomes]
rs7358236	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50445200-50449800	Weak transcription	K562	blood
2	chr10:50445600-50450200	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr10:50447600-50452400	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr10:50447600-50453000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr10:50447800-50448600	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr10:50447800-50450000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links