Variant report

Variant	rs11119665
Chromosome Location	chr1:211201458-211201459
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11119653	0.83[AFR][1000 genomes]
rs11119661	0.82[AFR][1000 genomes]
rs11119700	1.00[EUR][1000 genomes]
rs11119701	1.00[EUR][1000 genomes]
rs11119703	1.00[EUR][1000 genomes]
rs11119704	1.00[EUR][1000 genomes]
rs12061710	1.00[EUR][1000 genomes]
rs12062424	1.00[EUR][1000 genomes]
rs12063183	1.00[EUR][1000 genomes]
rs12063554	1.00[EUR][1000 genomes]
rs12064954	1.00[EUR][1000 genomes]
rs12065047	1.00[EUR][1000 genomes]
rs12067778	1.00[EUR][1000 genomes]
rs12068018	1.00[EUR][1000 genomes]
rs12069230	1.00[EUR][1000 genomes]
rs12070528	1.00[EUR][1000 genomes]
rs12071874	1.00[EUR][1000 genomes]
rs12076586	1.00[EUR][1000 genomes]
rs12078498	0.85[YRI][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12079934	1.00[EUR][1000 genomes]
rs12084637	1.00[EUR][1000 genomes]
rs12086827	0.95[YRI][hapmap];0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12089737	1.00[EUR][1000 genomes]
rs12089911	1.00[EUR][1000 genomes]
rs12096590	1.00[EUR][1000 genomes]
rs17017024	1.00[EUR][1000 genomes]
rs28523567	1.00[EUR][1000 genomes]
rs57654955	1.00[EUR][1000 genomes]
rs58263592	1.00[EUR][1000 genomes]
rs60471497	1.00[EUR][1000 genomes]
rs73071568	1.00[EUR][1000 genomes]
rs73071587	1.00[EUR][1000 genomes]
rs73073478	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73073488	1.00[EUR][1000 genomes]
rs73075420	1.00[EUR][1000 genomes]
rs73075431	1.00[EUR][1000 genomes]
rs73075455	1.00[EUR][1000 genomes]
rs73075457	1.00[EUR][1000 genomes]
rs73075496	1.00[EUR][1000 genomes]
rs73077469	1.00[EUR][1000 genomes]
rs73077471	1.00[EUR][1000 genomes]
rs74157510	1.00[EUR][1000 genomes]
rs7523281	0.82[AFR][1000 genomes]
rs7531557	0.83[AFR][1000 genomes]
rs7547391	1.00[EUR][1000 genomes]
rs7554031	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4410	chr1:211193724-211210571	Enhancers Weak transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211182800-211228600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:211192600-211209000	Weak transcription	HSMMtube	muscle
3	chr1:211194400-211209200	Weak transcription	HSMM	muscle
4	chr1:211198800-211209600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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