Variant report

Variant	rs12078498
Chromosome Location	chr1:211194215-211194216
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11119665	0.85[YRI][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11119700	1.00[EUR][1000 genomes]
rs11119701	1.00[EUR][1000 genomes]
rs11119703	1.00[EUR][1000 genomes]
rs11119704	1.00[EUR][1000 genomes]
rs12057232	0.87[AFR][1000 genomes]
rs12061710	1.00[EUR][1000 genomes]
rs12062424	1.00[EUR][1000 genomes]
rs12063183	1.00[EUR][1000 genomes]
rs12063554	1.00[EUR][1000 genomes]
rs12064954	1.00[EUR][1000 genomes]
rs12065047	1.00[EUR][1000 genomes]
rs12067778	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12068018	1.00[EUR][1000 genomes]
rs12069230	1.00[EUR][1000 genomes]
rs12070528	1.00[EUR][1000 genomes]
rs12071874	1.00[EUR][1000 genomes]
rs12072849	0.83[AFR][1000 genomes]
rs12076586	1.00[EUR][1000 genomes]
rs12079934	1.00[EUR][1000 genomes]
rs12080732	0.83[YRI][hapmap];0.83[AFR][1000 genomes]
rs12084637	1.00[EUR][1000 genomes]
rs12086827	0.87[YRI][hapmap];0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12089737	1.00[EUR][1000 genomes]
rs12089911	1.00[EUR][1000 genomes]
rs12096590	1.00[EUR][1000 genomes]
rs17017024	1.00[EUR][1000 genomes]
rs28523567	1.00[EUR][1000 genomes]
rs57654955	1.00[EUR][1000 genomes]
rs57821233	0.81[AFR][1000 genomes]
rs58263592	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60471497	1.00[EUR][1000 genomes]
rs6540646	0.83[AFR][1000 genomes]
rs73071568	1.00[EUR][1000 genomes]
rs73071587	1.00[EUR][1000 genomes]
rs73073478	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73073488	1.00[EUR][1000 genomes]
rs73075420	1.00[EUR][1000 genomes]
rs73075431	1.00[EUR][1000 genomes]
rs73075455	1.00[EUR][1000 genomes]
rs73075457	1.00[EUR][1000 genomes]
rs73075496	1.00[EUR][1000 genomes]
rs73077469	1.00[EUR][1000 genomes]
rs73077471	1.00[EUR][1000 genomes]
rs74157510	1.00[EUR][1000 genomes]
rs7547391	1.00[EUR][1000 genomes]
rs7554031	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4410	chr1:211193724-211210571	Enhancers Weak transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211182800-211228600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:211184800-211198600	Weak transcription	Brain Hippocampus Middle	brain
3	chr1:211187000-211198200	Weak transcription	Brain Angular Gyrus	brain
4	chr1:211187600-211198200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr1:211190600-211198800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr1:211192400-211194800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr1:211192400-211194800	Weak transcription	A549	lung
8	chr1:211192400-211198400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr1:211192600-211198400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:211192600-211199800	Weak transcription	Brain Substantia Nigra	brain
11	chr1:211192600-211209000	Weak transcription	HSMMtube	muscle
12	chr1:211194000-211194400	Enhancers	HSMM	muscle

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