Variant report

Variant	rs11155713
Chromosome Location	chr6:150520944-150520945
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150510588..150515411-chr6:150515857..150521257,7	MCF-7	breast:
2	chr6:150518298..150521152-chr6:150523437..150526060,2	K562	blood:
3	chr6:150520781..150525407-chr6:150526478..150529331,4	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs2839879	0.87[ASN][1000 genomes]
rs58353759	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59301654	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59643688	0.92[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9371343	0.92[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9371345	0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9371804	0.83[AMR][1000 genomes]
rs9371809	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9371810	0.91[AMR][1000 genomes]
rs9371811	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9371817	0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9371818	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9383712	0.91[ASN][1000 genomes]
rs9383713	0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9383717	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9383718	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9383719	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9384224	0.92[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9384228	0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9384229	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9384230	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9384231	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9384232	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9384234	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9397191	0.92[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9397721	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9397728	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9397730	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9397731	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150514800-150524000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:150517600-150529200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:150518000-150522200	Enhancers	Left Ventricle	heart
4	chr6:150518200-150523000	Weak transcription	Stomach Mucosa	stomach
5	chr6:150518200-150530800	Enhancers	Fetal Heart	heart
6	chr6:150518400-150521400	Weak transcription	Esophagus	oesophagus
7	chr6:150518600-150521400	Weak transcription	HMEC	breast
8	chr6:150518600-150521800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr6:150518600-150522400	Weak transcription	Pancreas	Pancrea
10	chr6:150518600-150523200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:150518600-150523200	Weak transcription	Lung	lung
12	chr6:150518800-150521400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr6:150518800-150521600	Weak transcription	Fetal Muscle Leg	muscle
14	chr6:150518800-150521600	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr6:150519400-150521000	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr6:150519400-150522000	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr6:150519600-150522000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:150519800-150524200	Enhancers	K562	blood
19	chr6:150519800-150524800	Enhancers	Fetal Intestine Large	intestine
20	chr6:150520000-150521000	Enhancers	Psoas Muscle	Psoas
21	chr6:150520000-150521200	Weak transcription	Fetal Brain Male	brain
22	chr6:150520000-150521600	Weak transcription	Right Atrium	heart
23	chr6:150520000-150521800	Enhancers	NHEK	skin
24	chr6:150520200-150524400	Enhancers	Fetal Intestine Small	intestine
25	chr6:150520200-150525200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr6:150520400-150522000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr6:150520600-150521400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr6:150520600-150523200	Weak transcription	Right Ventricle	heart
29	chr6:150520800-150523200	Enhancers	Colonic Mucosa	Colon
30	chr6:150520800-150523200	Enhancers	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links