Variant report

Variant	rs9383712
Chromosome Location	chr6:150510820-150510821
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150401590..150402107-chr6:150510124..150510897,2	MCF-7	breast:
2	chr6:150502431..150505236-chr6:150510724..150512561,2	K562	blood:
3	chr6:150510588..150515411-chr6:150515857..150521257,7	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11155713	0.91[ASN][1000 genomes]
rs2839879	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58353759	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59301654	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59643688	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6906581	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9371343	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9371345	0.81[ASN][1000 genomes]
rs9371804	0.89[EUR][1000 genomes]
rs9371809	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9371810	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9371811	1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9371817	0.81[ASN][1000 genomes]
rs9371818	1.00[CHB][hapmap];0.81[CHD][hapmap];1.00[MEX][hapmap];0.91[ASN][1000 genomes]
rs9383713	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9383717	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9383718	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9383719	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9384224	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9384228	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9384229	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9384230	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9384231	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9384232	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9384234	0.96[ASN][1000 genomes]
rs9397191	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9397721	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9397728	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9397730	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9397731	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150497800-150511000	Weak transcription	NHEK	skin
2	chr6:150499600-150519600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:150502400-150511800	Weak transcription	Right Atrium	heart
4	chr6:150506600-150512000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr6:150506600-150515600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr6:150506800-150512000	Weak transcription	HMEC	breast
7	chr6:150507000-150513200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:150507200-150511200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:150507600-150512000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:150508000-150511000	Weak transcription	Left Ventricle	heart
11	chr6:150508000-150513600	Weak transcription	Lung	lung
12	chr6:150508400-150517000	Weak transcription	K562	blood
13	chr6:150510400-150511200	Enhancers	Right Ventricle	heart
14	chr6:150510400-150513400	Enhancers	Fetal Heart	heart
15	chr6:150510600-150512200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:150510600-150518000	Weak transcription	Psoas Muscle	Psoas
17	chr6:150510800-150514800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived

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