Variant report

Variant	rs9384228
Chromosome Location	chr6:150507235-150507236
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150505143..150508527-chr6:150511374..150514793,3	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11155713	0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2839879	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58353759	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59301654	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59643688	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6906581	1.00[JPT][hapmap]
rs9371343	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9371345	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9371804	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9371809	1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9371810	1.00[JPT][hapmap];0.83[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9371811	1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9371817	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9371818	0.90[CHB][hapmap];0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9383712	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9383713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9383717	1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9383718	1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9383719	1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9384224	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9384229	1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9384230	1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9384231	1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9384232	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9384234	0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9397191	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9397721	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9397728	1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9397730	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9397731	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150497800-150511000	Weak transcription	NHEK	skin
2	chr6:150499600-150519600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:150500000-150508000	Enhancers	Fetal Heart	heart
4	chr6:150502400-150511800	Weak transcription	Right Atrium	heart
5	chr6:150503400-150507400	Enhancers	Primary B cells from peripheral blood	blood
6	chr6:150503600-150507600	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr6:150503600-150507800	Enhancers	Primary B cells from cord blood	blood
8	chr6:150504200-150510600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:150504600-150507800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr6:150504800-150508000	Enhancers	Duodenum Mucosa	Duodenum
11	chr6:150505400-150507400	Weak transcription	Colonic Mucosa	Colon
12	chr6:150505400-150508400	Enhancers	K562	blood
13	chr6:150505600-150507600	Enhancers	Fetal Intestine Small	intestine
14	chr6:150505600-150510400	Weak transcription	Right Ventricle	heart
15	chr6:150506000-150507400	Enhancers	Fetal Intestine Large	intestine
16	chr6:150506200-150507400	Enhancers	Left Ventricle	heart
17	chr6:150506200-150507800	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr6:150506600-150507400	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr6:150506600-150507600	Enhancers	Stomach Mucosa	stomach
20	chr6:150506600-150512000	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr6:150506600-150515600	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr6:150506800-150507600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr6:150506800-150512000	Weak transcription	HMEC	breast
24	chr6:150507000-150507800	Weak transcription	Lung	lung
25	chr6:150507000-150513200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr6:150507200-150510800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr6:150507200-150511200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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