Variant report

Variant	rs2839879
Chromosome Location	chr6:150499767-150499768
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150499104..150501184-chr6:150507779..150510819,3	K562	blood:
2	chr6:150491966..150494133-chr6:150498224..150500888,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11155713	0.87[ASN][1000 genomes]
rs59643688	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6906581	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9371343	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9371804	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9371809	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs9371810	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9371811	1.00[JPT][hapmap]
rs9371818	1.00[CHB][hapmap];0.85[MEX][hapmap];0.87[ASN][1000 genomes]
rs9383712	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9383713	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9383717	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs9383718	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9383719	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap]
rs9384224	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9384228	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9384229	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs9384230	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs9384231	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs9384234	0.91[ASN][1000 genomes]
rs9397191	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9397721	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9397728	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap]
rs9397730	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886770	chr6:150395424-150499889	Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150491400-150506400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:150491600-150501400	Weak transcription	HMEC	breast
3	chr6:150494400-150501000	Weak transcription	Fetal Brain Female	brain
4	chr6:150497000-150502000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:150497200-150499800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:150497200-150502400	Enhancers	Left Ventricle	heart
7	chr6:150497400-150499800	Enhancers	Rectal Mucosa Donor 29	rectum
8	chr6:150497800-150500800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:150497800-150511000	Weak transcription	NHEK	skin
10	chr6:150498400-150500200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:150498400-150501000	Weak transcription	Right Atrium	heart
12	chr6:150498600-150501400	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr6:150498800-150500000	Weak transcription	K562	blood
14	chr6:150498800-150501400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr6:150499200-150500000	Flanking Active TSS	Fetal Heart	heart
16	chr6:150499400-150499800	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr6:150499400-150501400	Weak transcription	Esophagus	oesophagus
18	chr6:150499400-150501600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:150499600-150501400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr6:150499600-150501800	Weak transcription	Psoas Muscle	Psoas
21	chr6:150499600-150503600	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr6:150499600-150504600	Weak transcription	Colonic Mucosa	Colon
23	chr6:150499600-150505200	Weak transcription	Right Ventricle	heart
24	chr6:150499600-150506000	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr6:150499600-150519600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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