Variant report

Variant	rs9397191
Chromosome Location	chr6:150505345-150505346
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150495902..150498289-chr6:150504016..150506860,2	K562	blood:
2	chr6:150491837..150493416-chr6:150504605..150507001,2	K562	blood:
3	chr6:150505143..150508527-chr6:150511374..150514793,3	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11155713	0.92[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2839879	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58353759	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59301654	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59643688	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6906581	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9371343	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9371345	0.84[AMR][1000 genomes]
rs9371804	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9371809	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9371810	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9371811	1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9371817	0.84[AMR][1000 genomes]
rs9371818	1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9383712	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9383713	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9383717	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9383718	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9383719	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9384224	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9384228	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9384229	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9384230	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9384231	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9384232	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9384234	0.94[ASN][1000 genomes]
rs9397721	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9397728	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9397730	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9397731	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150491400-150506400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:150497800-150511000	Weak transcription	NHEK	skin
3	chr6:150499600-150506000	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr6:150499600-150519600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:150500000-150508000	Enhancers	Fetal Heart	heart
6	chr6:150502000-150506400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:150502000-150506400	Weak transcription	Esophagus	oesophagus
8	chr6:150502000-150506400	Weak transcription	HMEC	breast
9	chr6:150502400-150505400	Weak transcription	K562	blood
10	chr6:150502400-150511800	Weak transcription	Right Atrium	heart
11	chr6:150503400-150507400	Enhancers	Primary B cells from peripheral blood	blood
12	chr6:150503600-150507600	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr6:150503600-150507800	Enhancers	Primary B cells from cord blood	blood
14	chr6:150504200-150505400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:150504200-150505400	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr6:150504200-150506200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:150504200-150510600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:150504600-150505400	Enhancers	Colonic Mucosa	Colon
19	chr6:150504600-150507800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr6:150504800-150506200	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr6:150504800-150508000	Enhancers	Duodenum Mucosa	Duodenum
22	chr6:150505000-150505400	Weak transcription	Lung	lung
23	chr6:150505000-150506600	Enhancers	GM12878-XiMat	blood
24	chr6:150505200-150505600	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr6:150505200-150505600	Enhancers	Right Ventricle	heart
26	chr6:150505200-150505800	Enhancers	Left Ventricle	heart
27	chr6:150505200-150505800	Enhancers	Sigmoid Colon	Sigmoid Colon
28	chr6:150505200-150505800	Bivalent Enhancer	Small Intestine	intestine
29	chr6:150505200-150506600	Enhancers	Pancreatic Islets	Pancreatic Islet

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