Variant report

Variant	rs9383719
Chromosome Location	chr6:150516233-150516234
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150512430..150514564-chr6:150515573..150518401,3	K562	blood:
2	chr6:150514785..150516493-chr6:150643803..150645499,2	K562	blood:
3	chr6:150510588..150515411-chr6:150515857..150521257,7	MCF-7	breast:
4	chr6:150515558..150517711-chr6:150540869..150542397,2	K562	blood:
5	chr6:150514870..150517111-chr6:150523756..150525398,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11155713	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2839879	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap]
rs58353759	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59301654	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59643688	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6906581	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9371343	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9371345	0.91[AMR][1000 genomes]
rs9371804	0.83[AMR][1000 genomes]
rs9371809	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9371810	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9371811	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9371817	0.91[AMR][1000 genomes]
rs9371818	0.87[ASW][hapmap];0.90[CHB][hapmap];0.83[CHD][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[AMR][1000 genomes]
rs9383712	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9383713	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9383717	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9383718	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9384224	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9384228	1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9384229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9384230	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9384231	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9384232	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9384234	0.83[AMR][1000 genomes]
rs9397191	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9397721	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9397728	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9397730	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9397731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150499600-150519600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:150508400-150517000	Weak transcription	K562	blood
3	chr6:150510600-150518000	Weak transcription	Psoas Muscle	Psoas
4	chr6:150513600-150517200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:150513800-150516800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:150513800-150517000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:150513800-150517000	Weak transcription	NHEK	skin
8	chr6:150514000-150517000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:150514000-150517000	Weak transcription	HMEC	breast
10	chr6:150514200-150517000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:150514800-150517000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:150514800-150524000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:150515000-150517000	Weak transcription	Right Ventricle	heart
14	chr6:150515000-150517800	Weak transcription	Fetal Brain Female	brain
15	chr6:150515200-150516400	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr6:150515200-150518200	Weak transcription	Right Atrium	heart
17	chr6:150515400-150519600	Weak transcription	Fetal Brain Male	brain
18	chr6:150516000-150516600	Weak transcription	Fetal Kidney	kidney
19	chr6:150516000-150517000	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr6:150516000-150517800	Enhancers	Fetal Heart	heart
21	chr6:150516200-150516800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:150516200-150517000	Enhancers	Skeletal Muscle Male	skeletal muscle

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