Variant report

Variant	rs9384229
Chromosome Location	chr6:150512677-150512678
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150512430..150514564-chr6:150515573..150518401,3	K562	blood:
2	chr6:150505143..150508527-chr6:150511374..150514793,3	MCF-7	breast:
3	chr6:150512430..150515646-chr6:150516901..150519316,3	K562	blood:
4	chr6:150510588..150515411-chr6:150515857..150521257,7	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11155713	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2839879	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs58353759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59301654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59643688	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6906581	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9371343	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9371345	0.91[AMR][1000 genomes]
rs9371804	0.83[AMR][1000 genomes]
rs9371809	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9371810	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9371811	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9371817	0.91[AMR][1000 genomes]
rs9371818	0.90[CHB][hapmap];1.00[AMR][1000 genomes]
rs9383712	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9383713	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9383717	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9383718	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9383719	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9384224	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9384228	1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9384230	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9384231	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9384232	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9384234	0.83[AMR][1000 genomes]
rs9397191	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9397721	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9397728	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9397730	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9397731	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150499600-150519600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:150506600-150515600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:150507000-150513200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:150508000-150513600	Weak transcription	Lung	lung
5	chr6:150508400-150517000	Weak transcription	K562	blood
6	chr6:150510400-150513400	Enhancers	Fetal Heart	heart
7	chr6:150510600-150518000	Weak transcription	Psoas Muscle	Psoas
8	chr6:150510800-150514800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:150511000-150513800	Enhancers	NHEK	skin
10	chr6:150511200-150513800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:150512000-150512800	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:150512000-150514000	Enhancers	HMEC	breast
13	chr6:150512200-150513800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:150512400-150514000	Weak transcription	Left Ventricle	heart
15	chr6:150512600-150513200	Enhancers	A549	lung
16	chr6:150512600-150514600	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links