Variant report

Variant	rs1117991
Chromosome Location	chr6:46063486-46063487
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10807333	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10948278	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1117992	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11752816	0.93[EUR][1000 genomes]
rs11759657	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12190045	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12197121	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12198845	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12199777	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12201262	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12203117	0.82[EUR][1000 genomes]
rs12209129	0.92[EUR][1000 genomes]
rs1338465	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1416165	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1578004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16874220	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16874246	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3734207	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3777632	0.93[EUR][1000 genomes]
rs3806993	0.93[EUR][1000 genomes]
rs3822892	0.92[EUR][1000 genomes]
rs4434468	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57350848	0.93[EUR][1000 genomes]
rs72858662	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72858666	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72858667	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72858672	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7453667	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9369596	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9381422	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9381423	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9395149	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9395157	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:46062200-46063800	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr6:46062600-46066400	Weak transcription	Psoas Muscle	Psoas
3	chr6:46062800-46068800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr6:46062800-46071200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:46063000-46066400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr6:46063000-46080800	Weak transcription	Primary T cells from cord blood	blood
7	chr6:46063200-46066400	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr6:46063200-46071400	Weak transcription	Primary T cells fromperipheralblood	blood

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