Variant report

Variant	rs1338465
Chromosome Location	chr6:46057757-46057758
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:46057582..46058340-chr6:46188904..46189523,2	MCF-7	breast:
2	chr6:46057596..46058911-chr6:46174639..46175627,5	MCF-7	breast:
3	chr6:45897955..45898801-chr6:46057521..46058514,3	MCF-7	breast:
4	chr6:46057463..46058547-chr6:46377587..46378702,8	K562	blood:
5	chr6:46057650..46058456-chr6:46071148..46071923,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10807333	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10948278	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1117991	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1117992	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11752816	0.94[CEU][hapmap];0.93[EUR][1000 genomes]
rs11759657	0.88[CEU][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12190045	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12197121	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12198845	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12199777	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12201262	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12203117	0.82[EUR][1000 genomes]
rs12209129	0.92[EUR][1000 genomes]
rs1416165	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1578004	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16874220	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16874246	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3734207	0.94[CEU][hapmap];0.85[CHB][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3777632	0.94[CEU][hapmap];0.93[EUR][1000 genomes]
rs3806993	0.94[CEU][hapmap];0.93[EUR][1000 genomes]
rs3822892	0.94[CEU][hapmap];0.92[EUR][1000 genomes]
rs4434468	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57350848	0.93[EUR][1000 genomes]
rs72858662	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72858666	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72858667	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72858672	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7453667	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9369596	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9381422	0.92[CEU][hapmap];0.84[CHB][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9381423	0.94[CEU][hapmap];0.85[CHB][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9395149	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9395151	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9395152	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9395157	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:46057600-46058400	Enhancers	Fetal Kidney	kidney

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