Variant report

Variant	rs3822892
Chromosome Location	chr6:46138615-46138616
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:46138239-46139054	MCF-7	breast:	n/a	n/a
2	CHD2	chr6:46138236-46139069	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr6:46138351-46139104	HCT-116	colon:	n/a	n/a
4	TAF1	chr6:46138237-46139121	ECC-1	luminal epithelium:	n/a	n/a
5	TCF12	chr6:46138348-46139212	ECC-1	luminal epithelium:	n/a	n/a
6	EGR1	chr6:46138278-46139126	ECC-1	luminal epithelium:	n/a	chr6:46138522-46138535 chr6:46138726-46138736 chr6:46138338-46138347 chr6:46138523-46138534 chr6:46139116-46139126 chr6:46139111-46139124 chr6:46138523-46138532 chr6:46139115-46139125
7	TAF1	chr6:46138230-46139097	H1-hESC	embryonic stem cell:	n/a	n/a
8	MYC	chr6:46138353-46139043	MCF-7	breast:	n/a	n/a
9	POLR2A	chr6:46138447-46138725	ProgFib	skin:	n/a	n/a
10	BHLHE40	chr6:46138556-46138756	GM12878	blood:	n/a	chr6:46138701-46138717
11	ZEB1	chr6:46138382-46139004	GM12878	blood:	n/a	chr6:46138676-46138683 chr6:46138674-46138683
12	POLR2A	chr6:46138337-46138806	ECC-1	luminal epithelium:	n/a	n/a
13	POLR2A	chr6:46138433-46138829	MCF10A-Er-Src	breast:	n/a	n/a
14	POLR2A	chr6:46137927-46139228	H1-hESC	embryonic stem cell:	n/a	n/a
15	MYC	chr6:46138487-46139010	H1-hESC	embryonic stem cell:	n/a	n/a
16	POLR2A	chr6:46138294-46139048	MCF-7	breast:	n/a	n/a
17	SP1	chr6:46138505-46139008	GM12878	blood:	n/a	chr6:46138726-46138735 chr6:46138867-46138881 chr6:46138526-46138536 chr6:46138888-46138897 chr6:46138721-46138730 chr6:46138726-46138740 chr6:46138725-46138737 chr6:46138732-46138753 chr6:46138871-46138880 chr6:46138721-46138730 chr6:46138725-46138737 chr6:46138870-46138882 chr6:46138722-46138731 chr6:46138727-46138736
18	EP300	chr6:46138495-46138843	H1-hESC	embryonic stem cell:	n/a	n/a
19	USF1	chr6:46138491-46138921	H1-hESC	embryonic stem cell:	n/a	chr6:46138835-46138851 chr6:46138701-46138717
20	NFYB	chr6:46138553-46138989	K562	blood:	n/a	chr6:46138740-46138754
21	FOS	chr6:46138610-46138803	MCF10A-Er-Src	breast:	n/a	chr6:46138723-46138732
22	POLR2A	chr6:46138401-46139114	HCT-116	colon:	n/a	n/a
23	SP1	chr6:46138096-46139178	H1-hESC	embryonic stem cell:	n/a	chr6:46138726-46138735 chr6:46139114-46139126 chr6:46138867-46138881 chr6:46138526-46138536 chr6:46138888-46138897 chr6:46139115-46139129 chr6:46139121-46139133 chr6:46138721-46138730 chr6:46139115-46139125 chr6:46139122-46139132 chr6:46139116-46139125 chr6:46138101-46138110 chr6:46138726-46138740 chr6:46139121-46139133 chr6:46139115-46139124 chr6:46138725-46138737 chr6:46139114-46139126 chr6:46138732-46138753 chr6:46138871-46138880 chr6:46138721-46138730 chr6:46139122-46139131 chr6:46139122-46139136 chr6:46138725-46138737 chr6:46138870-46138882 chr6:46138722-46138731 chr6:46138727-46138736 chr6:46138097-46138111 chr6:46139123-46139132
24	TBP	chr6:46138283-46139133	H1-hESC	embryonic stem cell:	n/a	n/a
25	USF2	chr6:46138537-46139014	H1-hESC	embryonic stem cell:	n/a	chr6:46138835-46138851 chr6:46138701-46138717
26	SIN3A	chr6:46138053-46139173	H1-hESC	embryonic stem cell:	n/a	chr6:46138842-46138851
27	CREB1	chr6:46138193-46139052	H1-hESC	embryonic stem cell:	n/a	n/a
28	GATA3	chr6:46138519-46139069	T-47D	breast:	n/a	n/a
29	MAX	chr6:46138491-46139085	H1-hESC	embryonic stem cell:	n/a	n/a
30	POLR2A	chr6:46138259-46139050	HCT-116	colon:	n/a	n/a
31	HA-E2F1	chr6:46138178-46138835	MCF-7	breast:	n/a	chr6:46138719-46138731 chr6:46138727-46138736 chr6:46138715-46138730
32	MAX	chr6:46138373-46139218	ECC-1	luminal epithelium:	n/a	n/a
33	JUND	chr6:46138420-46139094	H1-hESC	embryonic stem cell:	n/a	chr6:46138723-46138732
34	USF1	chr6:46138596-46138803	GM12878	blood:	n/a	chr6:46138701-46138717
35	GABPA	chr6:46138136-46139190	MCF-7	breast:	n/a	chr6:46139123-46139132 chr6:46139116-46139125
36	POLR2A	chr6:46138167-46139222	Raji	blood:	n/a	n/a
37	E2F4	chr6:46138573-46138891	MCF10A-Er-Src	breast:	n/a	chr6:46138719-46138731 chr6:46138727-46138736 chr6:46138830-46138840 chr6:46138715-46138730
38	EGR1	chr6:46138314-46139138	ECC-1	luminal epithelium:	n/a	chr6:46139122-46139132 chr6:46139117-46139130 chr6:46138522-46138535 chr6:46138726-46138736 chr6:46138338-46138347 chr6:46138523-46138534 chr6:46139116-46139126 chr6:46139111-46139124 chr6:46138523-46138532 chr6:46139115-46139125
39	SP4	chr6:46138548-46138945	H1-hESC	embryonic stem cell:	n/a	n/a
40	ZNF143	chr6:46138380-46138832	H1-hESC	embryonic stem cell:	n/a	chr6:46138718-46138736
41	NFYB	chr6:46138469-46139020	GM12878	blood:	n/a	chr6:46138740-46138754
42	NRF1	chr6:46138593-46138767	H1-hESC	embryonic stem cell:	n/a	n/a
43	SP1	chr6:46138579-46138899	GM12878	blood:	n/a	chr6:46138726-46138735 chr6:46138867-46138881 chr6:46138888-46138897 chr6:46138721-46138730 chr6:46138726-46138740 chr6:46138725-46138737 chr6:46138732-46138753 chr6:46138871-46138880 chr6:46138721-46138730 chr6:46138725-46138737 chr6:46138870-46138882 chr6:46138722-46138731 chr6:46138727-46138736
44	USF1	chr6:46138422-46139103	ECC-1	luminal epithelium:	n/a	chr6:46138835-46138851 chr6:46138701-46138717
45	MAX	chr6:46138369-46139158	H1-hESC	embryonic stem cell:	n/a	n/a
46	GABPA	chr6:46138026-46139182	MCF-7	breast:	n/a	chr6:46139123-46139132 chr6:46139116-46139125
47	ELF1	chr6:46138156-46139219	MCF-7	breast:	n/a	chr6:46139116-46139128 chr6:46138836-46138848
48	EGR1	chr6:46138203-46139222	HCT-116	colon:	n/a	chr6:46139122-46139132 chr6:46139117-46139130 chr6:46138522-46138535 chr6:46138726-46138736 chr6:46138338-46138347 chr6:46138523-46138534 chr6:46139116-46139126 chr6:46139111-46139124 chr6:46138523-46138532 chr6:46139115-46139125
49	POLR2A	chr6:46138179-46138835	H1-hESC	embryonic stem cell:	n/a	n/a
50	YY1	chr6:46138456-46138927	HCT-116	colon:	n/a	chr6:46138833-46138844 chr6:46138839-46138853

Variant related genes	Relation type
ENPP5	TF binding region

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10807333	0.92[EUR][1000 genomes]
rs10948278	0.94[CEU][hapmap];0.92[EUR][1000 genomes]
rs1117991	0.92[EUR][1000 genomes]
rs1117992	0.92[EUR][1000 genomes]
rs11752816	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11759657	0.94[CEU][hapmap];0.84[CHB][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12190045	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12197121	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12198845	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12199777	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12201262	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12203117	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12209129	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12209820	0.94[JPT][hapmap]
rs1338465	0.92[EUR][1000 genomes]
rs1416165	0.89[EUR][1000 genomes]
rs1578004	0.91[EUR][1000 genomes]
rs16874220	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16874246	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2235882	0.94[JPT][hapmap]
rs3734207	0.88[CEU][hapmap];0.91[EUR][1000 genomes]
rs3777632	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3806993	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4434468	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57350848	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72858662	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72858666	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72858667	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72858672	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7453667	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9369596	0.90[EUR][1000 genomes]
rs9381422	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs9381423	0.88[CEU][hapmap];0.90[EUR][1000 genomes]
rs9395149	0.94[CEU][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9395151	0.94[CEU][hapmap]
rs9395152	0.94[CEU][hapmap]
rs9395157	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:46137400-46139200	Active TSS	iPS-20b Cell Line	embryonic stem cell
2	chr6:46137400-46139400	Active TSS	Brain Inferior Temporal Lobe	brain
3	chr6:46137600-46139200	Active TSS	HUES48 Cell Line	embryonic stem cell
4	chr6:46137600-46139200	Active TSS	Brain Angular Gyrus	brain
5	chr6:46137600-46139200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:46137800-46139000	Flanking Active TSS	Primary hematopoietic stem cells	blood
7	chr6:46137800-46139000	Active TSS	Psoas Muscle	Psoas
8	chr6:46137800-46139200	Active TSS	H1 Cell Line	embryonic stem cell
9	chr6:46137800-46139200	Active TSS	Brain Substantia Nigra	brain
10	chr6:46137800-46139200	Active TSS	Skeletal Muscle Male	skeletal muscle
11	chr6:46137800-46139400	Active TSS	ES-I3 Cell Line	embryonic stem cell
12	chr6:46137800-46139400	Active TSS	H9 Cell Line	embryonic stem cell
13	chr6:46137800-46139400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:46137800-46139400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:46137800-46139400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr6:46137800-46139400	Active TSS	Fetal Brain Female	brain
17	chr6:46138000-46138800	Flanking Bivalent TSS/Enh	Osteobl	bone
18	chr6:46138000-46139000	Bivalent/Poised TSS	Primary B cells from cord blood	blood
19	chr6:46138000-46139000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr6:46138000-46139000	Flanking Active TSS	Adipose Nuclei	Adipose
21	chr6:46138000-46139000	Active TSS	Brain Germinal Matrix	brain
22	chr6:46138000-46139000	Active TSS	Fetal Intestine Large	intestine
23	chr6:46138000-46139000	Active TSS	Fetal Intestine Small	intestine
24	chr6:46138000-46139000	Active TSS	Lung	lung
25	chr6:46138000-46139000	Active TSS	Rectal Mucosa Donor 31	rectum
26	chr6:46138000-46139000	Bivalent/Poised TSS	NHLF	lung
27	chr6:46138000-46139200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
28	chr6:46138000-46139200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr6:46138000-46139200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr6:46138000-46139200	Active TSS	HUES6 Cell Line	embryonic stem cell
31	chr6:46138000-46139200	Active TSS	iPS-15b Cell Line	embryonic stem cell
32	chr6:46138000-46139200	Active TSS	iPS-18 Cell Line	embryonic stem cell
33	chr6:46138000-46139200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr6:46138000-46139200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr6:46138000-46139200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
36	chr6:46138000-46139200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr6:46138000-46139200	Active TSS	Breast Myoepithelial Primary Cells	Breast
38	chr6:46138000-46139200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
39	chr6:46138000-46139200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
40	chr6:46138000-46139200	Active TSS	Colonic Mucosa	Colon
41	chr6:46138000-46139200	Active TSS	Duodenum Smooth Muscle	Duodenum
42	chr6:46138000-46139200	Active TSS	Ovary	ovary
43	chr6:46138000-46139200	Active TSS	Pancreas	Pancrea
44	chr6:46138000-46139200	Active TSS	Right Atrium	heart
45	chr6:46138000-46139200	Active TSS	HSMM	muscle
46	chr6:46138000-46139200	Active TSS	HSMMtube	muscle
47	chr6:46138000-46139400	Active TSS	Fetal Kidney	kidney
48	chr6:46138000-46139600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr6:46138000-46139600	Active TSS	HUES64 Cell Line	embryonic stem cell
50	chr6:46138000-46139600	Active TSS	Pancreatic Islets	Pancreatic Islet

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