Variant report

Variant	rs16874246
Chromosome Location	chr6:46067620-46067621
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10807333	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10948278	1.00[CEU][hapmap];0.82[CHB][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1117991	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1117992	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11752816	0.94[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11759657	0.88[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12190045	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12197121	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12198845	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12199777	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12201262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12203117	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12209129	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1338465	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1416165	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1578004	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16874220	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3734207	0.94[CEU][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3777632	0.94[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3806993	0.94[CEU][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3822892	0.94[CEU][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4434468	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57350848	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72858662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72858666	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72858667	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72858672	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7453667	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9369596	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9381422	0.92[CEU][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9381423	0.94[CEU][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9395149	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9395151	1.00[CEU][hapmap]
rs9395152	1.00[CEU][hapmap];0.80[CHB][hapmap]
rs9395157	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:46062800-46068800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr6:46062800-46071200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:46063000-46080800	Weak transcription	Primary T cells from cord blood	blood
4	chr6:46063200-46071400	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr6:46064200-46068600	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr6:46064400-46072800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:46064600-46069400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:46064600-46071400	Weak transcription	Primary hematopoietic stem cells	blood
9	chr6:46065200-46067800	Enhancers	Brain Hippocampus Middle	brain
10	chr6:46065200-46068000	Enhancers	Brain Substantia Nigra	brain
11	chr6:46066000-46067800	Enhancers	Brain Angular Gyrus	brain
12	chr6:46066000-46067800	Enhancers	Brain Anterior Caudate	brain
13	chr6:46066200-46067800	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr6:46066200-46068000	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr6:46066200-46070000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr6:46066400-46067800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
17	chr6:46066400-46068200	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr6:46066600-46070200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr6:46066800-46068600	Weak transcription	Fetal Muscle Leg	muscle
20	chr6:46066800-46070000	Weak transcription	Left Ventricle	heart
21	chr6:46066800-46076800	Weak transcription	Pancreas	Pancrea
22	chr6:46067000-46070000	Weak transcription	HMEC	breast
23	chr6:46067400-46067800	Enhancers	Adipose Nuclei	Adipose
24	chr6:46067400-46067800	Weak transcription	Psoas Muscle	Psoas
25	chr6:46067600-46068000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr6:46067600-46068400	Enhancers	Skeletal Muscle Female	skeletal muscle

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