Variant report

Variant	rs12199777
Chromosome Location	chr6:46087462-46087463
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10807333	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10948278	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1117991	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1117992	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11752816	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11759657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12190045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12197121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12198845	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12201262	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12203117	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12209129	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1338465	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1416165	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1578004	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16874220	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16874246	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3734207	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3777632	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3806993	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3822892	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4434468	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57350848	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72858662	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72858666	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72858667	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72858672	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7453667	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9369596	0.92[EUR][1000 genomes]
rs9381422	0.92[EUR][1000 genomes]
rs9381423	0.92[EUR][1000 genomes]
rs9395149	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9395157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:46080200-46095600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr6:46080600-46095400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:46081600-46096400	Weak transcription	Thymus	Thymus
4	chr6:46083000-46096200	Weak transcription	Primary T cells from cord blood	blood
5	chr6:46086600-46088000	Enhancers	Primary T cells fromperipheralblood	blood
6	chr6:46086800-46087600	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr6:46086800-46088000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr6:46087000-46088400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr6:46087000-46088400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr6:46087200-46087600	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr6:46087200-46087600	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr6:46087200-46088200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:46087400-46095400	Weak transcription	Primary hematopoietic stem cells	blood
14	chr6:46087400-46095600	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr6:46087400-46097000	Weak transcription	Aorta	Aorta

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