Variant report

Variant	rs1416165
Chromosome Location	chr6:46048000-46048001
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10807333	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10948278	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1117991	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1117992	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11752816	0.90[EUR][1000 genomes]
rs11759657	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12190045	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12197121	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12198845	0.90[EUR][1000 genomes]
rs12199777	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12201262	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12209129	0.89[EUR][1000 genomes]
rs1338465	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1578004	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16874220	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16874246	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3734207	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3777632	0.90[EUR][1000 genomes]
rs3806993	0.90[EUR][1000 genomes]
rs3822892	0.89[EUR][1000 genomes]
rs4434468	0.91[EUR][1000 genomes]
rs57350848	0.90[EUR][1000 genomes]
rs72858662	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72858666	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72858667	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72858672	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7453667	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9369596	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9381422	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9381423	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9395149	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9395157	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428482	chr6:45926644-46050182	Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:46044800-46048400	Active TSS	Fetal Intestine Large	intestine
2	chr6:46047400-46048600	Flanking Active TSS	Fetal Intestine Small	intestine
3	chr6:46047600-46048600	Bivalent Enhancer	Stomach Mucosa	stomach
4	chr6:46047800-46048000	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:46047800-46048200	Active TSS	Duodenum Mucosa	Duodenum
6	chr6:46047800-46050000	Weak transcription	Psoas Muscle	Psoas
7	chr6:46048000-46049200	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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