Variant report

Variant	rs3734207
Chromosome Location	chr6:46047458-46047459
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10807333	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10948278	0.94[CEU][hapmap];0.85[CHB][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1117991	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1117992	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11752816	0.88[CEU][hapmap];0.89[GIH][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes]
rs11759657	0.82[CEU][hapmap];0.89[GIH][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12190045	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12197121	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12198845	0.91[EUR][1000 genomes]
rs12199777	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12201262	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12203117	0.81[EUR][1000 genomes]
rs12209129	0.91[EUR][1000 genomes]
rs1338465	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1416165	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1578004	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16874220	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16874246	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3777632	0.88[CEU][hapmap];0.89[GIH][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes]
rs3806993	0.87[CEU][hapmap];0.91[EUR][1000 genomes]
rs3822892	0.88[CEU][hapmap];0.91[EUR][1000 genomes]
rs4434468	0.92[EUR][1000 genomes]
rs57350848	0.91[EUR][1000 genomes]
rs72858662	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72858666	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72858667	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72858672	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7453667	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9369596	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9381420	0.87[ASN][1000 genomes]
rs9381422	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9381423	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9395149	0.94[CEU][hapmap];0.85[CHB][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9395151	0.94[CEU][hapmap];0.85[CHB][hapmap];1.00[YRI][hapmap]
rs9395152	0.94[CEU][hapmap];0.85[CHB][hapmap];0.87[CHD][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap]
rs9395157	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428482	chr6:45926644-46050182	Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs3734207	TDRD6	cis	cerebellum	SCAN
rs3734207	TDRD6	cis	parietal	SCAN
rs3734207	MRPL2	cis	cerebellum	SCAN
rs3734207	RSPH9	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:46044800-46048400	Active TSS	Fetal Intestine Large	intestine
2	chr6:46047400-46047800	Flanking Active TSS	Duodenum Mucosa	Duodenum
3	chr6:46047400-46047800	Enhancers	Pancreas	Pancrea
4	chr6:46047400-46047800	Enhancers	Psoas Muscle	Psoas
5	chr6:46047400-46048600	Flanking Active TSS	Fetal Intestine Small	intestine

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