Variant report

Variant	rs11202672
Chromosome Location	chr10:89945934-89945935
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10509537	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11202670	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11202673	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11202674	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12241664	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12247701	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12250898	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12253955	0.83[AMR][1000 genomes]
rs12266719	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61855296	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61855300	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61855301	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61855302	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61855354	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89938000-89946000	Weak transcription	Aorta	Aorta
2	chr10:89939000-89950000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr10:89942200-89946000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr10:89944600-89950400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr10:89945000-89946600	Enhancers	Fetal Lung	lung
6	chr10:89945200-89946400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:89945400-89946000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:89945600-89946000	Enhancers	Dnd41	blood
9	chr10:89945600-89946800	Enhancers	NHDF-Ad	bronchial
10	chr10:89945600-89946800	Enhancers	NHLF	lung
11	chr10:89945600-89946800	Enhancers	Osteobl	bone
12	chr10:89945800-89946200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr10:89945800-89946200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr10:89945800-89946200	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr10:89945800-89946400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr10:89945800-89946400	Enhancers	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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