Variant report

Variant	rs11202674
Chromosome Location	chr10:89947268-89947269
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10509537	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11202670	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11202672	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11202673	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12241664	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12247701	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12250898	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12253955	0.83[AMR][1000 genomes]
rs12266719	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61855296	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61855300	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61855301	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61855302	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61855354	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89939000-89950000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr10:89944600-89950400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:89946200-89955200	Weak transcription	Aorta	Aorta
4	chr10:89946400-89953600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr10:89946400-89955000	Weak transcription	Right Atrium	heart
6	chr10:89946400-89955200	Weak transcription	Placenta	Placenta
7	chr10:89946400-89955200	Weak transcription	Psoas Muscle	Psoas
8	chr10:89946600-89950200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:89946800-89954000	Weak transcription	NHDF-Ad	bronchial
10	chr10:89947200-89948000	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr10:89947200-89948000	Enhancers	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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