Variant report

Variant	rs12253955
Chromosome Location	chr10:89906604-89906605
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10509537	0.87[AMR][1000 genomes]
rs11202670	0.83[AMR][1000 genomes]
rs11202672	0.83[AMR][1000 genomes]
rs11202673	0.83[AMR][1000 genomes]
rs11202674	0.83[AMR][1000 genomes]
rs12241664	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12247701	0.83[AMR][1000 genomes]
rs12266719	0.83[AMR][1000 genomes]
rs61855296	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61855300	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61855301	0.83[AMR][1000 genomes]
rs61855354	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89898400-89907200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr10:89904600-89907400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr10:89905400-89906800	Weak transcription	NHDF-Ad	bronchial
4	chr10:89905400-89907200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:89905600-89910800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr10:89906000-89908400	Enhancers	Adipose Nuclei	Adipose
7	chr10:89906200-89907400	Enhancers	Fetal Stomach	stomach
8	chr10:89906600-89906800	Enhancers	Small Intestine	intestine
9	chr10:89906600-89907600	Enhancers	Duodenum Smooth Muscle	Duodenum
10	chr10:89906600-89908200	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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