Variant report

Variant	rs61855296
Chromosome Location	chr10:89908954-89908955
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10509537	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11202670	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11202672	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11202673	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11202674	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12241664	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12247701	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12250898	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12253955	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12266719	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61855300	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61855301	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61855302	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61855354	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89905600-89910800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr10:89907000-89912400	Weak transcription	Small Intestine	intestine
3	chr10:89907600-89909000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr10:89907600-89909000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr10:89907600-89909400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr10:89907600-89909600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr10:89907800-89909400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:89908200-89909200	Weak transcription	NHDF-Ad	bronchial
9	chr10:89908400-89909800	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr10:89908400-89917200	Weak transcription	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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