Variant report

Variant	rs12247701
Chromosome Location	chr10:89951719-89951720
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10509537	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11202670	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11202672	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11202673	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11202674	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12241664	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12250898	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12253955	0.83[AMR][1000 genomes]
rs12266719	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61855296	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61855300	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61855301	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61855302	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61855304	0.85[ASN][1000 genomes]
rs61855354	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89946200-89955200	Weak transcription	Aorta	Aorta
2	chr10:89946400-89953600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr10:89946400-89955000	Weak transcription	Right Atrium	heart
4	chr10:89946400-89955200	Weak transcription	Placenta	Placenta
5	chr10:89946400-89955200	Weak transcription	Psoas Muscle	Psoas
6	chr10:89946800-89954000	Weak transcription	NHDF-Ad	bronchial
7	chr10:89949200-89952800	Weak transcription	Primary B cells from cord blood	blood
8	chr10:89949800-89956200	Enhancers	Thymus	Thymus
9	chr10:89950400-89956400	Enhancers	Fetal Thymus	thymus
10	chr10:89950600-89956200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:89950800-89955000	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr10:89950800-89955600	Enhancers	Primary T cells from cord blood	blood
13	chr10:89951000-89952400	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr10:89951000-89953600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr10:89951000-89955000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr10:89951000-89965600	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr10:89951600-89952800	Weak transcription	Fetal Muscle Leg	muscle
18	chr10:89951600-89953600	Enhancers	Primary T helper naive cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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