Variant report

Variant	rs61855354
Chromosome Location	chr10:89971611-89971612
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10509537	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11202670	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11202672	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11202673	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11202674	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12241664	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12247701	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12250898	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12253955	0.83[AMR][1000 genomes]
rs12266719	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61855296	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61855300	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61855301	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61855302	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61855304	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv895878	chr10:89959082-90006507	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89955400-89998000	Weak transcription	Aorta	Aorta
2	chr10:89966400-89973000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr10:89967800-89978200	Weak transcription	Pancreas	Pancrea
4	chr10:89968000-89972400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr10:89968800-89974800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr10:89969000-89972600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr10:89969200-89979400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr10:89969600-89974000	Weak transcription	GM12878-XiMat	blood
9	chr10:89969600-89974400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:89970600-89978000	Weak transcription	Right Atrium	heart
11	chr10:89970800-89980600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr10:89971200-89978200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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