Variant report

Variant	rs12266719
Chromosome Location	chr10:89967339-89967340
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10509537	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11202670	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11202672	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11202673	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11202674	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12241664	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12247701	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12250898	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12253955	0.83[AMR][1000 genomes]
rs61855296	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61855300	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61855301	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61855302	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61855304	0.90[ASN][1000 genomes]
rs61855354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv895878	chr10:89959082-90006507	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89955400-89998000	Weak transcription	Aorta	Aorta
2	chr10:89964400-89969000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr10:89965200-89967800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr10:89966000-89967600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr10:89966000-89969000	Weak transcription	Psoas Muscle	Psoas
6	chr10:89966000-89969000	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr10:89966200-89968600	Weak transcription	HMEC	breast
8	chr10:89966200-89969600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:89966200-89970200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr10:89966400-89969200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr10:89966400-89973000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr10:89966600-89969400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr10:89966600-89969600	Weak transcription	Fetal Lung	lung
14	chr10:89966800-89969400	Weak transcription	GM12878-XiMat	blood
15	chr10:89967200-89967600	Enhancers	Rectal Mucosa Donor 29	rectum
16	chr10:89967200-89968000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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