Variant report

Variant	rs11236018
Chromosome Location	chr11:73850973-73850974
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:20)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:20 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SP1	chr11:73850714-73851501	A549	lung:	n/a	n/a
2	NR3C1	chr11:73850868-73851334	A549	lung:	n/a	n/a
3	REST	chr11:73850795-73851397	H1-hESC	embryonic stem cell:	n/a	n/a
4	HEY1	chr11:73850918-73851266	K562	blood:	n/a	n/a
5	NR3C1	chr11:73850813-73851293	A549	lung:	n/a	n/a
6	POLR2A	chr11:73850899-73851320	H1-hESC	embryonic stem cell:	n/a	n/a
7	ZBTB33	chr11:73850914-73851258	K562	blood:	n/a	n/a
8	TEAD4	chr11:73850757-73851368	H1-hESC	embryonic stem cell:	n/a	n/a
9	REST	chr11:73850842-73851373	H1-hESC	embryonic stem cell:	n/a	n/a
10	POLR2A	chr11:73850905-73851290	H1-hESC	embryonic stem cell:	n/a	n/a
11	REST	chr11:73850308-73851642	H1-neurons	neurons:	n/a	n/a
12	NR3C1	chr11:73850819-73851297	A549	lung:	n/a	n/a
13	EP300	chr11:73850716-73851559	A549	lung:	n/a	n/a
14	SP1	chr11:73850777-73851387	A549	lung:	n/a	n/a
15	HEY1	chr11:73850946-73851265	HepG2	liver:	n/a	n/a
16	NR3C1	chr11:73850729-73851323	A549	lung:	n/a	n/a
17	TEAD4	chr11:73850671-73851519	H1-hESC	embryonic stem cell:	n/a	n/a
18	NR3C1	chr11:73850640-73851316	A549	lung:	n/a	n/a
19	TEAD4	chr11:73850828-73851427	HepG2	liver:	n/a	n/a
20	GATA3	chr11:73850838-73851519	A549	lung:	n/a	n/a

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73849175..73851405-chr11:73880732..73883222,2	MCF-7	breast:
2	chr11:73691531..73694874-chr11:73846318..73851293,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000256098	TF binding region
ENSG00000214517	Chromatin interaction
ENSG00000175567	Chromatin interaction
ENSG00000168014	Chromatin interaction

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10501415	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10898955	0.82[EUR][1000 genomes]
rs10898957	0.85[EUR][1000 genomes]
rs10898958	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10898959	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10898960	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10898961	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10898962	0.81[ASN][1000 genomes]
rs10898963	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11235988	0.91[EUR][1000 genomes]
rs11235994	0.84[EUR][1000 genomes]
rs11235995	0.84[EUR][1000 genomes]
rs11235996	0.84[EUR][1000 genomes]
rs11235997	0.84[EUR][1000 genomes]
rs11235998	0.84[EUR][1000 genomes]
rs11235999	0.84[EUR][1000 genomes]
rs11236000	0.84[EUR][1000 genomes]
rs11236002	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11236003	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11236005	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11236016	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11236020	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11236026	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11236027	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11236029	0.82[ASN][1000 genomes]
rs11600314	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11601582	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11602451	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11603981	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11604125	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11604713	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11606804	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11608147	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12222213	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12223320	0.84[EUR][1000 genomes]
rs12574038	0.84[EUR][1000 genomes]
rs12574039	0.84[EUR][1000 genomes]
rs12574047	0.84[EUR][1000 genomes]
rs12574556	0.84[EUR][1000 genomes]
rs12574650	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12574824	0.84[EUR][1000 genomes]
rs12574898	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12575211	0.84[EUR][1000 genomes]
rs1405653	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1405654	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1474471	0.83[EUR][1000 genomes]
rs1527302	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1615607	0.90[EUR][1000 genomes]
rs17132701	0.82[EUR][1000 genomes]
rs17132715	0.84[EUR][1000 genomes]
rs2091436	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2178000	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35826958	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3814724	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4019299	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4537786	0.81[EUR][1000 genomes]
rs4539349	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55823944	0.83[EUR][1000 genomes]
rs56298621	0.84[EUR][1000 genomes]
rs56366246	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57117016	0.83[EUR][1000 genomes]
rs59109060	0.82[ASN][1000 genomes]
rs59605334	0.83[EUR][1000 genomes]
rs60834556	0.84[EUR][1000 genomes]
rs61901208	0.84[EUR][1000 genomes]
rs61901211	0.84[EUR][1000 genomes]
rs61901216	0.82[EUR][1000 genomes]
rs61901217	0.84[AMR][1000 genomes]
rs61901238	0.86[EUR][1000 genomes]
rs61901245	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61901246	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61901247	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61901248	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61901252	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61902362	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6592547	0.87[EUR][1000 genomes]
rs7110734	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7115146	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7115407	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7119710	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7125032	0.84[EUR][1000 genomes]
rs7125400	0.84[EUR][1000 genomes]
rs72341762	0.93[EUR][1000 genomes]
rs7935920	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7941203	0.84[EUR][1000 genomes]
rs7941525	0.84[EUR][1000 genomes]
rs7951239	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7951290	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7951743	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7952669	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs826035	0.94[EUR][1000 genomes]
rs826044	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757451	chr11:73842609-74545888	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv2759837	chr11:73842609-74557597	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	nsv39023	chr11:73850955-73850985	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv2624180	chr11:73850972-73850973	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73802200-73880800	Weak transcription	Esophagus	oesophagus
2	chr11:73804000-73880800	Weak transcription	Aorta	Aorta
3	chr11:73817600-73880800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr11:73824400-73852400	Weak transcription	Colonic Mucosa	Colon
5	chr11:73825000-73880400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr11:73825800-73878600	Weak transcription	Fetal Brain Male	brain
7	chr11:73829400-73873800	Weak transcription	Right Ventricle	heart
8	chr11:73833200-73852800	Weak transcription	Pancreas	Pancrea
9	chr11:73841200-73851000	Strong transcription	Primary T cells fromperipheralblood	blood
10	chr11:73841400-73851800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr11:73841800-73859800	Weak transcription	Small Intestine	intestine
12	chr11:73842200-73852200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr11:73843400-73851400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr11:73843400-73867200	Weak transcription	Fetal Stomach	stomach
15	chr11:73843600-73851800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr11:73844800-73852600	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr11:73844800-73858200	Weak transcription	Ovary	ovary
18	chr11:73844800-73880200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr11:73847200-73869800	Weak transcription	Fetal Kidney	kidney
20	chr11:73847800-73852400	Weak transcription	Gastric	stomach
21	chr11:73847800-73866800	Weak transcription	Fetal Muscle Trunk	muscle
22	chr11:73847800-73870800	Weak transcription	Duodenum Mucosa	Duodenum
23	chr11:73847800-73875000	Weak transcription	Fetal Lung	lung
24	chr11:73847800-73875200	Weak transcription	Left Ventricle	heart
25	chr11:73847800-73880800	Weak transcription	Spleen	Spleen
26	chr11:73848000-73853600	Weak transcription	Lung	lung
27	chr11:73848000-73873000	Weak transcription	GM12878-XiMat	blood
28	chr11:73848400-73852200	Weak transcription	Fetal Brain Female	brain
29	chr11:73848800-73851200	Enhancers	HMEC	breast
30	chr11:73848800-73851400	Strong transcription	Primary T cells from cord blood	blood
31	chr11:73848800-73853400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr11:73849000-73851000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr11:73849000-73851000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr11:73849000-73851000	Enhancers	HepG2	liver
35	chr11:73849000-73852600	Genic enhancers	HSMM	muscle
36	chr11:73849000-73852800	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr11:73849000-73853400	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr11:73849200-73851000	Enhancers	Brain Hippocampus Middle	brain
39	chr11:73849200-73851000	Enhancers	NHLF	lung
40	chr11:73849200-73852800	Enhancers	HUVEC	blood vessel
41	chr11:73849200-73852800	Enhancers	NHDF-Ad	bronchial
42	chr11:73849400-73851400	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr11:73849400-73852400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr11:73849600-73851000	Genic enhancers	Adipose Nuclei	Adipose
45	chr11:73849600-73873800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr11:73849600-73875000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr11:73849800-73851800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr11:73849800-73852800	Enhancers	Skeletal Muscle Female	skeletal muscle
49	chr11:73849800-73853200	Enhancers	Cortex derived primary cultured neurospheres	brain
50	chr11:73850000-73853400	Enhancers	Hela-S3	cervix

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